RNA id: AMCG00005048


Basic Information

Item Value
RNA id AMCG00005048
length 4050
RNA type mRNA
GC content 0.54
exon number 21
gene id AMCG00005048
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13391709 ~ 13429286 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCCATGAGGTGCTGGATTTTAAGCACCACTGCCGTTCTTCTGGGCATTCTTGCCATCCCCATCCATGGAGGGCTGCTTTTGAAAGCCACCAGAGTCAGGAGGGACACGACCGAGGCGGAAGGCCGTCTTGCCAATCAAAGCATCTCCATGAAGGAGCAGCCGGTTATTTTTAACCACGTGTACAACATCAACGTGCCTCTGGAGTCCCTGTGCTCGGTGGACCTGGAGTCAGCGCCCAGCCGTGGAGTGAAGGtggaggagcaggagggggCCTCGCAATACACCGAGCAGACAGGAGATCGAGAGAACCAGGTCACCTTCACCCACCGCATCAACATCCCCAAGCAGGCCTGTGCCTGTCCCGGTGCCTCCGCCGTGCAACAGCTGGCTGACCGCATCGAGATGCTTGAGAGGGAGGTGTCTCTCCTGAGAGCACAGTGCTCCTCAAGTTGTTGTGGAGAGAGTGCAGCTGTAGGTCGGCTAGACTATGTGCCACACTGCAGTGGGCATGGAAACTTCAGCATGGATGCCTGCAGCTGTCTCTGTGAGGAGGGCTGGACGGGCAAGAACTGCTCTGAGCTGCGCTGCCCCGGAGACTGCTCTGGCCAGGGTGTGTGCATAGAGGGCGAGTGCGTGTGCGACGGGGACTTCGCCGGCGATGACTGCGCAGAGGCCCGCTGTCCGGGAGATTGCAACGGCCGGGGGCTGTGCATTGACGGGGAGTGCGTGTGCGAGGAGGCCTTCTCTGGGGAGGACTGCTCTGCCACCCGCTGCCTCAATGACTGCTCTGACCAAGGCGTCTGCATCAACGGGTCTTGCCAGTGCCAGCCGGGCTATGTCGGGGAAGACTGCTCTCAGGTCACCTGCCTCAACAACTGCAGCCAGAAGGGAAACTGCAAACAGGGGATGTGTGCGTGTGAAACTGGGTACATGGGTGAGGATTGTTCTGCAGTTGCCCCACCTACAAACCTCAGAGTAGTGGGAATCACAGAACAAACCATTGATCTGGAATGGGTTGGCTCCTTTATAGTGACTGACTATTTTGTCACCTATGCACCGACCAGCCCCGGGGGGGTCCAGTTGGAGATTAGGGTGCTAGGAAACATCACCAACTGCACCATCAGGGAGCTGGAGCCTGGCATTGAATACAACATCAATGTGTATGCTGTGCTCAACAAAGTTCTCAGTGTCCCAGTCAGTGCCGTGGTCTTGACATATCTCTCCACTCCAGAAGGTTTACTTTTCAAATCCATCACTGAGACATCAGTGGAAGTGCAGTGGGAGCCGTTTTCATACTCTTTTGATGGCTGGGAAATTAGCTTCATTCCAAAGGATAATGAAGGTGGAATGACTGCCCAGCTGCCGAGCACCATAACCTCATTCAACCAGACTGGTCTAAAGCCAGGGGAAGAGTACACTGTGAATTTGGTGGCTCTGAAGGACCAAGCTAGGAGCCAGCCTGCATCAGCAACTGTGACAACTTTGATTGATGGTCCGAGTCAGCTGATGGTCCGAGATGTCTCAGACACGGTGGCCTTTGTTGAGTGGACTCCTCCGAAGGCAAAGGTTGATCAGATTGTGTTGCGGTGCAGGCTGATTAATGGCGAGGGCCCCAGGACCACCTTCAGGCTGCAGCCCACCTTGAGTCAGTACTCTCTGCAGGTCCTGCGGCCAGGCTCTCGCTACGAGGTGTCAGTGAGTGGCGTCCGGAAGGGGAACGAGAGCGATGCCATTTCAGCTGAATTTAATACTGAAATTGACGCCCCAAAGAATTTGCGTGTTGTCTCCAAGACTTCCAGGGTTCTGGACCTGGAGTGGGACAACAGCGAGGCGGAGGTGGAGAGCTACAAGGTGGTGTACAGCACACTGGCAGGAGACCAGTACCATGAGGTCATTGTGCCAAGGAATGATGGATTGACAACCAAGGCAACCCTAACAGATTTGGTGCCAGGAACCGAGTATGGCATTGGAATATCAGCCACTCTGGGGGGCAATCAAAGTGATCCAGCAACAATGAATGCCAGAACAGGACTCGACAGTCCTATGGACTTGGCAGTGACAGCCTCCACAGACAACACCATCTCGCTGCTCTGGGGGAAAGTCCACGGGCCCATCGAAAACTACAGAGTGATGTATACCTCGTCTACAGGCGTGACATCGGAGGTGACTGTCCCCAAAGACAAGTCAGTGGTCACCCTGACTGACCTAGAGCCCGGGACAGAATACTCCATAACACTGACAGCACAGCGGGGCCGCCAGCAGAGCGCAGCCGCAACTATCGATGCTTTCACAGGCTTCCGACCGGTTACACAGCTCTACTTCTCCGACATCACTTCCTCTACAGTGACAGTGGCCTGGAGTGCCCCCGCCCCACCTGCCGACATGTTTATCTTAAACTACAACCCGCAGGACCACGGCGAGACCCTAGAGGTCACACTGGAAGGCTCTAAGACCCAAGCAACCCTCACCGGCCTACAGCCTTCCACAGAGTATATTGTCACATTGGTGACCGTACAGGGGACTATACCCTTTGAACCAGTAGTGGGGTCGGTTATCACAGGTATGGATCCTCCCAGAGAGATTGCTGTGTCTTACGTCACTGAGGACTCGGTCACAATTTCTTGGATCCCCCCGATTGCAATATTTGACTACTACAAGATGTCCTACCAGTCATCTCGAGGGAGAGTGGACAGTCAGGTGATTGACAATGATGTGACCAATTACACCCTGCACAACCTGCACCCAGCCACAGAGTATGAGATCAGCCTGAATGCGATGCGAGGGAGCCAGGAGAGTGAGGTCATGAGCGTCAGCGTGCACACAGCCATGGATAGTCCTCTGGACCTGGCGGCCTTGAATGTGACTCCTACAGGAGCTCTGCTCAGGTGGAACCCTCCTCTCTCCAGTGTGGACAACTATGTACTCATCCTCACACACAACCAAGtAGCTGCTGACACTATCCTGATAGAAGGTGCCAAGCAAGAGTACAAGCTCACCAGACTCATCCCCAGCACAAGTTATTCTGCAGCCTTATATGCCACCAAGGGATCCCTGACTAGTGGAACAAATGTGATGCCTGACACTTTgcgcccccccacctccacagcCATGGACGCACCTCAGAACCTGACAGCCAGCGAGGTCACCCACCGGAGCGCGCTCATTTCCTGGCAGCCACCTATTGCTGACATTGAAAATTACCTGCTCACCTACAAATCCAGGGATGGCAACCGAAAGGCAAGTCTTCCAAATGCTGAGGACACATGGATCCGGTTAGAGGGCCTCTCTGAAACAACAGAGTACACCGTGAGGCTGCAGGCAGCGCGAGGCTCAGAAACCAGCGTCATTGTTTCAACAACCTTTTCCACAGGAAACCGTCTGTTTGCCACCCCTCAGAATTGCGCCCAGCACCTAATGAATGGAGAGACCCTGAGTGGGGTTTACACTATTTATGTGAACAGAGACCCCAACCAAGGAGTGCAGGTGTACTGTGACATGACCACAGACAGTGGGGGCTGGATTgttttccAAAGGCGTCAGAATGGCCTAACAGATTTCTCCAAGAGATGGAACGACTACAGGACTGGATTTGGCAATCTGGAGGATGAGTTCTGGCTTGGGCTGGATAACATTCACAAGATTGCCTCCCAGGGCCGTTACGAGCTGCGGATCGACATGAGGGATGGGCAAGAATCTGTATATGCCAACTATGATAAATTTGCCATCGGAGATGTACGAAACCTGTACAAGCTCCGAATAGGGGAGTACAATGGCACTGCTGGGGACTCTCTGTCCTACCATCAGGGACGTCCCTTCTCCACCAAGGACAAAGATAATGATATTGCAGTGACAAACTGTGCCCTTTCATACAAGGGGGCTTGGTGGTACAAGAACTGTCACAGAGCAAACCTGAACGGCAAATACGGCGAGTCCAGACACAGTCAGGGGATTAACTGGTACCATTGGAAAGGCCACGAATTCTCCATTCCCTTCGTAGAGATGAAGATGCGCCCATACAACTACCGCAGCGTCACGGGGAAAAAGAGG

Function

GO: NA

KEGG:

id description
K06252 TN; tenascin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 132848 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 576191 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 610539 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 775759 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 1023241 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 632435 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 633058 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 633579 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 728294 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 750818 14180104 ~ 14183513 (-) True G145146
AMCG00005042 mRNA downstream 24446 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005036 mRNA downstream 73857 13315390 ~ 13317852 (-) True AMCG00005036
AMCG00005039 mRNA downstream 78132 13309544 ~ 13313577 (-) True AMCG00005039
AMCG00005037 mRNA downstream 84749 13301123 ~ 13306960 (-) True AMCG00005037
AMCG00005041 mRNA downstream 96290 13263243 ~ 13295419 (-) True AMCG00005041
AMCG00005045 mRNA upstream 152175 13581461 ~ 13601804 (-) True AMCG00005045
AMCG00005044 mRNA upstream 243457 13672743 ~ 13684709 (-) True AMCG00005044
AMCG00005049 mRNA upstream 275940 13705226 ~ 13710482 (-) True AMCG00005049
AMCG00005047 mRNA upstream 310168 13739454 ~ 13744629 (-) True AMCG00005047
AMCG00005046 mRNA upstream 374721 13804007 ~ 13830346 (-) True AMCG00005046
TU182413 other downstream 54963 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 1235331 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1235331 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4485115 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4550721 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 1535293 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5585261 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 6140773 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6328946 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 6591424 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile