RNA id: AMCG00005049


Basic Information

Item Value
RNA id AMCG00005049
length 618
RNA type mRNA
GC content 0.56
exon number 4
gene id AMCG00005049
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13705226 ~ 13710482 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCGGCGCTCTGAGCACGGGTTTCTATTTGGGGCTCTGAAAGAGCTGTCAGTTAACATCGAAGGGAATTCTCCGTCAGATGAATCTgaagaaagggaaaaggaaCCCAAAACCCTCACCTTCCCCGCCTACATCGCCAGCCTCCTGGACTCTGGTGCCAAGCGCATGGCGGCAGGTGTGCGGATGGACTGCAGGAGCCAGGGCCAGTGCCCCTCCGCCTGCCATCTCTGCCACATGAGCCCCGGGTCCGGCCGCTCGACAGAACCGGTCCTCCTGCAGATCACCAAGGCCGCCCCTCTGTACGAGCTGGTCTCCAACAATGAAACGTACAAGTCTTTACAAGAAGCAATGATGAGCATGCTCTGGTGCTCAGGAAATGGTGATGTCATCGACGACTGGTGTAGATGTGACTCAAGTGCCTTTGGGGCGGATGGTCTGCCCACCTGTGCCcccctgccacagcctgaGTTAAAGTTGTCACATACCTATGAGCCCAGCAGCTCATTGGTTATCTTGGAATGGAGTCACACTGAACCACCAATCGGGGTGCGTGTTGTAGACTACCTCATCAGTCAGGAGAAGGTGACCGAGAGGACAGACCATTCGAAGGTGGAAACA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182393 lncRNA downstream 446365 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 889708 12812977 ~ 12815518 (-) True G144954
TU182287 lncRNA downstream 924056 12780573 ~ 12781170 (-) True G144941
TU182259 lncRNA downstream 1089276 12615715 ~ 12615950 (-) True G144920
TU182222 lncRNA downstream 1336758 12367423 ~ 12368468 (-) True G144893
TU182539 lncRNA upstream 351239 14061721 ~ 14062111 (-) True G145129
TU182540 lncRNA upstream 351862 14062344 ~ 14062624 (-) True G145130
TU182541 lncRNA upstream 352383 14062865 ~ 14063123 (-) True G145131
TU182553 lncRNA upstream 447098 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 469622 14180104 ~ 14183513 (-) True G145146
AMCG00005044 mRNA downstream 20517 13672743 ~ 13684709 (-) True AMCG00005044
AMCG00005045 mRNA downstream 103422 13581461 ~ 13601804 (-) True AMCG00005045
AMCG00005048 mRNA downstream 275940 13391709 ~ 13429286 (-) True AMCG00005048
AMCG00005042 mRNA downstream 337963 13366931 ~ 13367263 (-) True AMCG00005042
AMCG00005036 mRNA downstream 387374 13315390 ~ 13317852 (-) True AMCG00005036
AMCG00005047 mRNA upstream 28972 13739454 ~ 13744629 (-) True AMCG00005047
AMCG00005046 mRNA upstream 93525 13804007 ~ 13830346 (-) True AMCG00005046
AMCG00005055 mRNA upstream 340222 14050704 ~ 14061662 (-) True AMCG00005055
AMCG00005056 mRNA upstream 356216 14066698 ~ 14075633 (-) True AMCG00005056
AMCG00005054 mRNA upstream 371976 14082458 ~ 14089340 (-) True AMCG00005054
TU182413 other downstream 368480 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 1548848 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1548848 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 4798632 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 4864238 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 1254097 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 5304065 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 5859577 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 6047750 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 6310228 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031172 False 2344 mRNA 0.51 13 NC_007113.7 34767171 ~ 34982017 (+)