RNA id: AMCG00005050


Basic Information

Item Value
RNA id AMCG00005050
length 5698
RNA type mRNA
GC content 0.39
exon number 2
gene id AMCG00005050
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13956702 ~ 13964422 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

cTTCCACTGCGACACCATGGACCACTCTTGTTTAACTATGAAACAACTCACTGTGTTTCTCCTGTATCCTCAGATGAATACAAGAGTTTCCTGAAGAGACTCCCAACAGATCGCTTTTTGAATGGATCAGCAATACTGCAGTACTGGACTGCAGACTCCAGCCTACAGCGCCGCTACGGACAACTGGAAGCTGGCACCAAGCTGCTCTTTGGGAAAGTCCAACGAATTGTGCGGAAACTCTTTGCTCTGAGCAAACGCTGCCCAAAACAGCCCAGGATTAGCCTCCCCAGGGAAAGGTCTTTAAGCTTCTGGCTGAACCGGGCCCAGTCCCTCTTGTACTGCAACGAGCACAGCGTGCCGGGGACCTTTTCTGAGGAGACACACGCTTGTACCTGTGCTTTTGAGCACTTGGTCTGCCAGGGCACGATACCCTGCCTGGTGGCAGAGGGAGCAGCTTGTTCCTCCTGTGCGTCTGACAACATCACTCGCTGCGGCAACTGTCACCCGGGCTACGTGCTCCATCAGGGCACCTGCAGACCAGATGTCGCCGGCTCTCTGGATCATTACGTCAATTTTGACTCAGACATGCCAGACTCAGAGGCAAAGTATCTCCTGCAGCATCTGGACAGCAGGATGGAGGTCCATGCCATCTATATCAGCAACGACGTCCGCCTGGGCAGCTGGTTCAACCCCGCCTGGCGCAAGCGCATGCTACTCACCCTGaagagcaacaaaaacaaatccaaccTGATCCACATGCTCTTGGGCATTTCCTTTCAGATCTGCTCAACCAAGAACAGCACTCTGGAGCCAGTGCCTGCCATTTATGTGAACCCCTTTGGAGGCAGTCACTCGGAAAGCTGGTTCATGCCAGTTAACCAACAAGATTTCCCAGACTGGGAGAGAACTAAACTGGATGCCTCACTTCAGTGTTACAACTGGACCCTGATGATGGGGAGCAAGTGGAAGTCCTTCTTTGAAACGGTGCATATCTACCTGCGGAGCCGCATAAGGTCTGATGACCCCACCAGTAACGAGACCATTTTCTATGAGCCCTTAGATCTCGATGACCGCTCAGCCAACATGGGCTACATGAAGATAAACAGTCTCAAAGTGTTTGGGTATAGCATGCACTTTGACCCAGAGGGTATTAAAGACTTGATCATGCAGCTGGACTACCCCTACACTCAGGGATCTCAAGACTCGGCGCTCCTCATGCTGCTGGAGATGCGAGACAGGATCAACCGTCTCTCTCCGGCCGGCCAGCAGCGCCTGGACCTCTTCTCCTGTCTTTTGCGTCACAGGCTCAAGCTCTCCACCAGTGAGGTGGTTCGAATCCGAGACTCTCTCCAGATGTTTAGTTCCAAGCTGCCAAATTCAATGGATCCAGAACTGGGCCAGTTGTGCAGCTAGCCTTCAAAGCTTCACTATGTTTCTGTTGTGGCCTGCGATTACAACGACAAAAGggtcttgtgtttgttttgtggcacATGTTAATAGTCTCAAGGCGTGTGTATCTTTACACAGAGTAGACCTTTGAGCATGCATGCTCAGTTTAAAGGTGAACCACTGGGGTGAAGAGAATAAAGGGAGCAGTGACCTCGTCTTCATCAGAAAAGAGTCCTAACATTTGACAAGCAGATTGGAGCGAATCTAgatgttgttgtctttttaaagcACCGCTATCCTTTCCAGCAAATAGTCAGTGAAGTAGGTCAAAGGATCTAGATATTGTCTGTACAGAGGTCAAAAGCTCAGCTATGAGATATCATGCAAACTAAAGcttcccaaaaaaaaaaatgcatttgtggagaaacagttaaaatacattttcagacatttatttttaatgagcgATTTCATTCCGGTGGACGCTGTGGTCAGCAACTATTAAAACAAAGGAGAACAGAGAAAGAATCCACAGGCCTGTTATTATAACACAAAGGCTTAAGTGTCCAATGTGATACACAGCCCTTTCATTGTCATCTTACAAATTATTTGCTTTCATGCTTTCTCTGCAGTGAAGTTTCATGTTTGGAGGTattggctgttttgttttgttttgttttggaggtACTAATGACAGACCTTTCTGATATTTGAAACCTTAATTGTTTACAAAGAAATATgacttttgttttctatatatataatttttgtggTGTTCAGATACATAacacaagaagaaaaatgtcTAGGAGGGTCAAATGGCTTATCAAAGCTCCAAGGACACAATGGCGATCGCCTAGGCACAATTTTACTTTACCATTCAGAACACAAGAGCATGGTTCATGAAACGTTTCGATGTAAATATTTACTCTTCTTACCTTAAAGTGTGTAGTTTATAAAGAAAGGCTGAACCGAATTTGCACAAGTGCAAAGGCcaaaaaatattacacatttgtaattaataagCATCAAAATTGAATGCCTTATGGAAAGCAGTCATTGTTCCTCTGGTAACCAAGCACACTTAGTAATCTGTACAAAGCTGTAACAActctctttcattttcattaatcGCAGTAGAAGTAAGGTCTCTGTAGTCAATACTTTACTGgaatacaaatttaaacataTTACCAATCTTACTTTCACTGTGTATGTTAATTCTTTTTGCACTTGTTTGGGAAAAAAACTACTTCTGACAACATGAAGATCAAGGGTCTCCAAATTGTCTGGTGGACAGCCACAAGCCATTCCAACTGGGCTctcaattatttcatttaactaattattGACTGAAAGAGTCAATGTAAGTATGAATTTTACCcactgaaaaaagaaacatatacAACCTGAAGGACTGAGGCATGACAATACCAGGGATGGATACTAGTTGTCTATAGCTCAAGTTCAACAAAGTCAGTGGCTTTGATGAAAAAATagcaacagcaaaaaacaaaggATTTAAACACAGAACACACCAGAACTCAGTTTATTGTAAGGACTCCGATTCAGGTCAGTcataagaaaatacatacatgtttccAATAGTGCAAACATGCGACCATGTGTGACAATAAGCCATGCCTTCTTCAAATCTAACCACAAAGCAACTTTTaaagaaaagtgtgtttttaagaaatgtgaATCTTAATGTAAATCAATGGAGTTGAACAACATGAATACTTAATTCAGccaaaaataatttgcagttgAGTTATTTGCAGTcagtatttttaacttttttatgtttgtttgtttttaaattaaatggacaTACCAATTACACCtggaattacttttttaaattccagAAACGGTGAATGTTCATAACATACAAAGGGCAGAGATTTCAAGGTGACAGTGATTTCCTAAAAAGTCTATTAGGACGCTTAAAACCTACAATTCACTGTTATGTGATATCCTCATTGTTCAACTGTATTAATAGGGCAGCTCCTGACTATATTCATAAGATGGACATCATATTAAGTTTGTAAATACAGGTTATTTATCTTAATGTCACTTATAAATCATTGCTTGCCCTCCAACTTATCATAGCTGCTCTGAAGGACACCTAATCAATCACAGAATGCCTATTATGCTCAGATCTTTTCTAACTGCCccacaagaaaaaaaggaagaacttgttaaagatttttttcagttatttatgaTATCTCGGGAATACCAGCAGTGAGATTGTACACTAGTATTAGAAATACTGTCCTAAGTGAAGTTCTTGTTTGGCTTTCCTTCCACTTCCTTGATTTTGAATAGTTCCCCCTCTCTTTTTCATACTTGGTTTTAGAATGTAATTTTGCAAACAGGACAGAGATATTCAGAAAGAGCACATGCGCGCACACATCAAACCCCCATGTAAGTGGCTGAGTGTTCTTGGTATGATTCGCTTGCTCGAGATAAAGCAACAAGATCTCATGGTATCTGCTGTCATAAACACTTTGGGAAATGTTGACAGCTGTGGCATTGTGGACGGGCTCCTATCTGAAAACATGTGCTCCAGTGCAACATGCATCATTGTCATACCTATGTAAGCTCTTCTTGCTCTTGcttctttaaatgtttacaacagCTTTCAGAAAATCAGGAGCAAATTCGGGAGAATGCGGTCTGAAGACATGGGGATAGGAGCAGTATGTGCCATTGGTAATTTTAAACGGAAACATTTGCGATAGAGAAATTAGTAGAAATAATCTATTTGTTTGCAATACAATATCTGtggatatgtttgttttttcttttattaggGTTCTCTACCCACTCATCATATACAAtgtaaaaattatgtaaaaaaacagcattgagGGGATTGGTTTGCCCCCAACAGTAacaatttatgaaaataaaataatctttttgcTATAAGAAAAGATATTTACTATGAGATTATAATTTATTGCATATATGTGTGATTGGTttcttttgtattctttatttctattttttgtaatatcagtgataaaaaaaacacattttgttaagACTAttagcaaaaaactaaaaaaaatgccatgacacacaaatgcacatggAAGAACTTTTATAATATCGGCCTTTACATTGTGTAAATGTCTGTGGAGAACCTTGTATGACTATATGCTGCATTAAGTGTActttttactgtacattttatcaCATTGTATCATATGTCTTTACGTTGTTCCACATTGACCAAATATTCCCCTTGCTTTCAGTAAGGTTTCGTCATGATAAACCATCAAGACAGTTTAAAAAGAGAACTATAAGCACGGCATCAGAATGTGATCAACCTACATAGAACGATTTTGTTGAAGTGTGAATACACGgctgtaatatataaaaaacctGCAATAATTATTCCTGCCCATCTTTCAGCTTGAAGCGTAAGTCTCTCTTGTCATTTGTTCCCTCTGTTAGAATGTGTTTGGATATTGGTAAGCCTTTTTGGTAGGGAATGAGTAAAGGTGATTAATAAGAATACACAACTTCCACAATTTCACTTTAAACCATGTTAGGTAGAGCACTAATGGACATTAACACCAGAGATttgaagaatataaaataagttttgcATTAAGTTATTTACAGGAATGTACTACTGCAACTACCACTACTACAAATACTATTAATTACAGTTAACTACAGATAGTTAAAACTATCATTCCACCCTtcacagttgttttgttttacaagcaagaatacaaaatagtgcAAAAACTTATGAATGGTTagtttttcagtgtttaaagAAAGAACATTTACAGAGAacccatttttaattaaaagtttcCCCATTCCATCACACCTTCCACATAGATGTATAAATGGAGAAGCTGTAGCCTTTCATTAACTTAACTTTAACATGAACTTATTCCACAACAGAATGCAGATAAGTGTGCTGAACCAAAGTGCTTTAAGTGTATAGTCAGGAGTTTACTCTGCCTTCTTGTACTCTCAATACCAATACAAGCAGGAATACTCCAGCAAATCTCAGCTGTTGGTATCACCTTGTCCTATATAGATGGCGTTAAAGCTGTggttgtatatgtatatgcatgtgtgtgcttgtgtacaAATTAGACgtgtacacaaacacatacatacatcattaAACACactcagagagacagacaaacaatcAACTTTTGAATATTCTTTTCGTCTGGCCAACATAAGCTTTCTTTCTGGAAATATTTTATCCAGATGTAAATTCTTGGCTATGTTCTTAtattgagaaataaaaaaaatgactaaA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182456 lncRNA upstream 383242 13573242 ~ 13573460 (+) True G145067
TU182404 lncRNA upstream 638850 13315378 ~ 13317852 (+) True G145039
TU182378 lncRNA upstream 697626 13257717 ~ 13259076 (+) True G145017
TU182366 lncRNA upstream 748485 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 1007729 12947182 ~ 12948973 (+) True G144960
TU182538 lncRNA downstream 222179 14186601 ~ 14188315 (+) False AMCG00005060
TU182563 lncRNA downstream 239712 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 712287 14676709 ~ 14677597 (+) True G145251
TU182730 lncRNA downstream 813816 14778238 ~ 14791127 (+) True G145268
TU182742 lncRNA downstream 874162 14838584 ~ 14861156 (+) True G145278
AMCG00005052 mRNA upstream 14791 13922227 ~ 13941911 (+) True AMCG00005052
AMCG00005058 mRNA upstream 308879 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005057 mRNA upstream 315006 13612606 ~ 13641696 (+) True AMCG00005057
AMCG00005043 mRNA upstream 593150 13338099 ~ 13363552 (+) True AMCG00005043
AMCG00005035 mRNA upstream 658020 13295774 ~ 13298682 (+) True AMCG00005035
AMCG00005051 mRNA downstream 97957 14062379 ~ 14063936 (+) True AMCG00005051
AMCG00005053 mRNA downstream 117278 14081700 ~ 14082904 (+) True AMCG00005053
AMCG00005060 mRNA downstream 190733 14155155 ~ 14188329 (+) True AMCG00005060
AMCG00005059 mRNA downstream 364426 14328848 ~ 14370657 (+) True AMCG00005059
AMCG00005061 mRNA downstream 414286 14378708 ~ 14391257 (+) True AMCG00005061
TU182286 other upstream 1175532 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 2293334 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 6225702 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 8532581 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 9584613 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 1419821 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 3800835 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 5615151 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 6217932 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 6309091 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile