RNA id: AMCG00005054


Basic Information

Item Value
RNA id AMCG00005054
length 2040
RNA type mRNA
GC content 0.45
exon number 10
gene id AMCG00005054
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14082458 ~ 14089340 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGCAGGTCGCTTCACTTTCCACACGGTGCCGGAGAGACTGTTCAGACATCTCCTGAGACCCCCAGGTGTGGGGGGCAGGTTGGGTCTGTCCCCCTCCATCCACAGGACCTCCTCTCAGCAGCATCACACGTACAGAGCCGCAGTGTGCACAGAGCTGAAGAAACCCCTCAGTCTGCACGATGTACCCGCCACTGAACTCAAACCTGCTGAGGTAAGGGTATCTGTCCATTTTTGTGGCCTGAATTTTGCAGATATCCTCGTATGTCAGGGGCTGTACCAGGAGAGGCCTGCCCTGCCGTTCACTCCGGGGATGGAGTTCTCAGGGTGTGTGGTTGAAACTGGAAGTGATGTTACAGAAGTACAAAAAGGGGACCGTGTGTTGGGATTGGGAGGAAGTGGAATGGCGGAGGAGTGCGTTGTGGATCAAAAGCTGCTGTGGAAGATCCCTGATGAGCTGGGCTATGAGGAGGCAGCTGCTCTCGGCGTGGAGACCGTGCTGGTGACAGCAGCCGCGGGAGGAGCTGGCCTCGCTGCAGTGGATATCGCAGCTCATGCTCTCCAGGCAAAGGTTATAGCAGCCGCAGGTAGTGCTGAGAAGTGTGCCCTCGCTGTGCAGAAAGGAGCATTTGCGAGTATCAACTACACAACCGGCAACCTGAAAGAGGAGCTCAAGAAGATTACAAACAAAAAGGGGGTGGATGTAGTGTTTGACGCAGTTGGTGGGGATGTCTTTAAGGATGCTCTCAGTAGCTTGAGCTGGGAGGGCCGAATTGTAGTGGTTGGCTTTGCAGGCGGAGCAATCCCTTCTATTCCAGCCAACCTGCTCCTGCTGAAGAACATTTCCGCTCTTGGCGTTTTCTGGGGGCGCTACCGTGACAAGGACTTCCCAGTATTCTCACAGTCCATCTCTAAAGCCATTCAGCTCTGCCAGGCGGGAAAAATCAAGCCTCACATTGGTGCCACATATAGGCTGGAGCAGGTGAATGAAGCCCTTCACCACTTGTCACAACGCCAGTCTGTTGGAAAAGTGGTCTTATCCATGaagaaataaagagaagaaCAGGGTTGATCTTCTAGTTTCCATTAGGCCGGTGCACACAAAACACCAGCTCACCTGCAGCCACAGTTCCACTCTCAAATGGATTTAAATCTTTTCTTTGGTATTATCACCAGTTGAATGCAATTCATTCACACTGCTTCAGCTCTGAGCAATTCCCTAACACCGTAGGGAGCAGTAAAGAGGACTTCACTGCTTCACGCTTATTATATCACCTTGGTATGTAGAAACTGTAATAAGGATGTGGAGGAACTACAATTTAATCTCAGAGACTATTCTATTTATGGTATTTCATTCACACAAAAAGtccaaaacacaaattacaaatcagtatggattaattactgtaataaaacatgCTCCCGCCTCGTGCTCATCTCTTGTGGGTTTTAGAAGGTTCTGAagctgcaataaaaaataagtgaGTATTAACaggggacaaaaataaaaaaaacatgaataaataagaataagtgAATGATATGACAaaactttaaatagtaaaatcaAACTGTCTATGGTTAGTGACTCACTTGGAGCCATCAGTTTTGCCAGAATGGATTTGAGTACATCTTCAAGATGTTTCTTCTGATCCACAAAGTCCTGTGCAGTAGGGTTTTTAGTATTCTGAATCCAGTCATATTTTGATGTGCAAGAGTTGAGGCAAGTGTTCTGAAACATAGAAAACATGCACCAACATCTTTACATCTTTACTTACTCATCAGCCGAGTCTCATGTTTTAAACGATCACAACGGCGTATTGATTAATAGTAAGAAAAACCAAGGCAACTGATATAAACGAGAGATACTAACGAGATTCTCGAAATGTGATTAAAGTGGGGCTGTTAAATCTGTGCAgtggaaatgtatatttgcatTCATATACATTCACAGAAAACTATGAAATATTGGTAGAAACACATTAAAGGATGGCAAAATGGTGAAACCCTTCTGAATCTCAATAAAAGCTCTTGATGACAG

Function

GO: NA

KEGG:

id description
K00344 qor, CRYZ; NADPH:quinone reductase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182541 lncRNA downstream 19335 14062865 ~ 14063123 (-) True G145131
TU182540 lncRNA downstream 19834 14062344 ~ 14062624 (-) True G145130
TU182539 lncRNA downstream 20347 14061721 ~ 14062111 (-) True G145129
TU182393 lncRNA downstream 823597 13257922 ~ 13258861 (-) True G145031
TU182307 lncRNA downstream 1266940 12812977 ~ 12815518 (-) True G144954
TU182553 lncRNA upstream 68240 14157580 ~ 14161976 (-) True G145138
TU182562 lncRNA upstream 90764 14180104 ~ 14183513 (-) True G145146
TU182564 lncRNA upstream 114919 14204259 ~ 14204489 (-) True G145148
TU182594 lncRNA upstream 337626 14426966 ~ 14455083 (-) True G145173
TU182835 lncRNA upstream 979073 15068413 ~ 15069113 (-) True G145358
AMCG00005056 mRNA downstream 6825 14066698 ~ 14075633 (-) True AMCG00005056
AMCG00005055 mRNA downstream 20796 14050704 ~ 14061662 (-) True AMCG00005055
AMCG00005046 mRNA downstream 252112 13804007 ~ 13830346 (-) True AMCG00005046
AMCG00005047 mRNA downstream 337829 13739454 ~ 13744629 (-) True AMCG00005047
AMCG00005049 mRNA downstream 371976 13705226 ~ 13710482 (-) True AMCG00005049
AMCG00005064 mRNA upstream 301896 14391236 ~ 14395883 (-) True AMCG00005064
AMCG00005070 mRNA upstream 391067 14480407 ~ 14483193 (-) True AMCG00005070
AMCG00005069 mRNA upstream 455482 14544822 ~ 14552948 (-) True AMCG00005069
AMCG00005071 mRNA upstream 493803 14583143 ~ 14618511 (-) True AMCG00005071
AMCG00005073 mRNA upstream 531840 14621180 ~ 14625015 (-) True AMCG00005073
TU182413 other downstream 745712 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 1926080 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 1926080 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5175864 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5241470 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 875239 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4925207 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 5480719 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 5668892 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5931370 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile