RNA id: AMCG00005057


Basic Information

Item Value
RNA id AMCG00005057
length 3957
RNA type mRNA
GC content 0.52
exon number 14
gene id AMCG00005057
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 13612606 ~ 13641696 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgacGTGTGTTAGACTACTGGTTGTAGCCTTGGTGATACTGAACATATGGCTGCTAAATTCTGTTCAGTCAGACCATGTCCAAAAGTACAAGTGGGCTCTGGCTCTGAAAGCAGACAGGATCCAAGCGTCCTTGGTCAGTGAGCAGTGCAGATCTGCGAGTCCTGCCAGGCGGACTCGGTCTGCAGTTCAACAGCACCCCTTAGGGGACTATCCAAAGAAGCACACAAGGCCGAGAGATTTCGATCATGAGAAAGCTGCTTATCTGGTGGAGTCTTGCCCTGAAGGGTGCAAACATGGTACTGAAGCCCAACAACTGCAAAACAGGGATCATAAATCGTGGAGCAGCAGTAAGACTAGAGCCAGGAGGGGAACTCTGACATTAACCCCTCGTTTAAGGAGAGAAGACAACTATCCAGAACTAGACACACAGCCAAATGCTACCGCTAACCCCCTTCCTTTTAACGATTCTGCTCTTGAGGAGTATGGGgagtcaaataaaaatgctgctgcaaagCCAGGTGAACAACCGCTGTTCAGGGAAATTAAGAGATTGCCAAGGAACAACACGAGGAAGGGCCACGCCAGGGTACCCAGGAGCGCCGCAGGATCCTACGGGAAGGAAGCATTAGAGGACATCCCTCAGAACATGGCATTGACCCACGGGAGGGACGTGAAGTTGAGTCCCACTGACTCTTCTGCCGAGAGGGAGGACTATTCAGGAGAGCATGATCTGGAATTTGGTCCCAGCAGTGCGTTCTGGGGCTCAGAAACGAGGGACGTTCCCCCCCGGCAAATGACAACCATGTACTTCTCAGGCAAAAAGGAGCAGCTCAAGATCCACCCAGACGCTGGTGTGGAGCTGCCTCGCTCACAGTTCAGTGTCGAGTTGTGGGTAAAACCAGAGGGAGGACAGAGCAATCCAGCTATCATAGCAGGAGTTTTCGACAACTGTTCCCATTCCCTGAGCGACAAAGGCTGGTCAGTGGGCATCCGTTCGGTGGAGCCTACAGGCCGAAAAAATGGTCGATTTTTTTTCACACTTCGTACTGATCGTGCCCCCAAAGCCATCACTGTTATTGGGCACCAGCGTTACCGGCCCAACTCATGGACACACTTAGTGGTTAGCTACAATGGCTACCAAATGACACTTTATGTGGATGGGGCCAAGGTTGGGGAAAGTGGTGAGCAAACAGGCAATCTTTATAGCCCGTTTATGAGTGCCTGCCGCACATTCCTTCTTGGTGGTGACCATTCTGATATTGGACACAATTTCCGCGGGCACGTTGGGGGAGTTCTTATCTGGGGGAGTGCCCGTGCCCAAGAAGAGCTTTCAGGGGGCTTTGCTCAAGTCGGGAGTGAAGAACCGCTTCTGGCACTCAGGGGTGATTACTCCAATGTTGAAAGACAATGGCAGCCTTACAAAGATGGTGGCCACCCGAGTTTAGAAATCATTCCCATTCCAGAAAGGGAGCTGGTGTCCGCCTTCCTACCCCCTCCCTGTGGCCTGACGGTGTGTGACAATACAGATGTTATCCTGAGCTACAACAACCACTGGCCGCTGAGAACAGGAAAGAAGATCAGATACAGGGTGGTGAACATCTGTAATGACGATGGCTCAAACCCTACTGTGTCGCAAGagcaaatacaaattcaacACAAGGCTCTAGGTGATGCTTTCAAGCCATACAATATAACCTGGGAGCTAACAATCCATAACTTGTACAATTCCTCTCTCCGTCAACGTATCATCTTGAGCAACTGCGATACCAGCAAGATAGGGAATCGTCACTGCAACCCAGAGTGTGACCACCCTCTGACCGGCCATGACGGAGGGGATTGCGTCCATCTTGGCCCGTGCTACAACTGGAAAAAGCGAGATGGAGTTTGCAACATGGAGTGCAACAGTATGCGCTATGACTTTGATGATGGCGACTGCTGTGACCCTGAGATCACAGATATCATGAAAACGTGCTTTGATCCAGAGTCTGTGGATAGGGCTTATATGAGTGTGAAGGAGTTGAAGGAGTTTCTGCAGCTGAGCAGTACTGAGTATCTCAACGTGTTCTTTGCAAACAATTCAGTCAGAGAGGAACTGGCAGGAGCCGCCACTTGGCCTTGGGCAAAGGAGGCCCTCAGCCACCAGGATGACAACTGCACCAATAATTTTACTCCAAACCAGGTGGCCCGCATGCATTGTTATGTGGACTTAGTATATCAGAATTGGGTCGATGGCAGTAAGCCCGCCCCTGTTCCTCTTCCTCCTATGGTGATTGGCCAGAGTACACATTCCGTGTCCCTTCATTGGTTGCATCCTGTGAGTGGGAAGCTATACCACAGAGAGGGCGGAGGTAATTGTGGCGACTGTGATGAAGATGGAGCGTTTCACCAGTATGCCCATGAGGCCGCGTCACCCCGTGTGTGCGACTCCTCCGGCTACTGGACACCTGAAGAGGCCATAGGTCCCCCAGATGTTTACCAGCCCTGTGAGCCCAGCCTTCAGGCTTGGAGCCCTGAGCTAAACCTATATGATGCCAATATGACCGCACCATGTCCTCAAACAGAAGGGTGTCTTCTGGAGCTGCATTTCCTTCACCCTGTCATTCCAGAGAGTCTCACAGTGTGGATCACCTACATCTCAACAGACTCCACCAAAGTCATCTCCAACATCGAGATCCTGACTGAACAGGGAGAGTCCTTCAAACTTGGTCCCCAGCACACCTTCTGTGATGTGCCGCTAACCCTGTGCCTCAACACCCAGAAGAAGGTTACAGGGGTGAAGATCTACACCTTTGATGAGAAGATGGAGATTGACGCTGCCCTCCTGACATCGAGGCCGCAGAACCCTCTCTGCTCCAGCTGCCGTCTGTTCGAGTACCACATAGTCAGAGAACCACCTTTTCCTAACGGGCCAGTGAGGCAGGCAGGCCGCAATTTCACTGACACGGACGTGGCCCAGGGGGAGCTGTATGTGTACCAGGTGCAGGTGGCAGCAGACGGGCTTCTCAGTGAGCCCTCCCCAGCCCTCATCTACACGCATGGCACGCACTACTGTGGAGATGGTCTGGTGGACCTTAAAGAAGATTGTGATGATGGCAATCTCTTGGATGGGGACGGCTGCTCTAAGAAATGTCACATGGAAACAGGATTCAATTGCCAAGGGGAGCCCAGCTTGTGCTATGTGTTTGACGGTGACGGCGTCTGTGAAGAGTTTGAGAGGGGCTCCAGCGTGCAGGACTGTGGCTTCTTCACCCCCAAGGGCTACACTGACCAGTGGGCAAATGAAGCTCAGGCATCCCACCAACATGACACCAAGTGTCCAGTGGTGACTGTGCAAGGGGAGCCCTCGCTCAGCCAGGTGTGCAAGTCTCAGTTCCTTGATGTGAGTGATGGTCTGTCACATTATGCCTGGTTTCCCTGCACTGCCCACCAAGATGGCTTCTCTGACTTTGACGAAATGCCAGTGTGGCTGAAGGTGGGATTTGCTCGACCTGGGGTGGCAGCCTCAGTCATCATCTACCTGGCTTCAGATGGATCATGGCTAGGAGACCAATACAGGAAAACAGTGGACATCAAGCTGAGTGACACCAATGGCAAAATTCATAGCTtaggTTCCTATGAACTCTCTTGCCAGCGTAATCCTCTCGTCGTCAACATCACTCACAACCTGAGCCTCCCATTCTTCCACACAGCTGCCGTCCTCCTCAACTTCTCCTCGCCCCACGTGGCTGTCATGGCAGTGGCACTACGGACCTCCTGTCATTTCAGTGCCTTCGCCCTGAACGGATGCGTGCGGAAGCCTTGCAGTACCAATGCCTGCAGTCCCCCGCAGATCGAACACACCTCTACAACCTGCACCTCCGAGTCTAGCCAGCCCAAGTGCTCGATCACCTGCCATCAAGGCTTCTCACTCAACGTGCTCAGCGGCAAGAGGCTCCAACCAAACCAGGTGGGTTGA

Function

GO: NA

KEGG:

id description
K08647 PAPPA2; pappalysin-2

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182456 lncRNA upstream 39146 13573242 ~ 13573460 (+) True G145067
TU182404 lncRNA upstream 294754 13315378 ~ 13317852 (+) True G145039
TU182378 lncRNA upstream 353530 13257717 ~ 13259076 (+) True G145017
TU182366 lncRNA upstream 404389 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 663633 12947182 ~ 12948973 (+) True G144960
TU182538 lncRNA downstream 544905 14186601 ~ 14188315 (+) False AMCG00005060
TU182563 lncRNA downstream 562438 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 1035013 14676709 ~ 14677597 (+) True G145251
TU182730 lncRNA downstream 1136542 14778238 ~ 14791127 (+) True G145268
TU182742 lncRNA downstream 1196888 14838584 ~ 14861156 (+) True G145278
AMCG00005043 mRNA upstream 249054 13338099 ~ 13363552 (+) True AMCG00005043
AMCG00005035 mRNA upstream 313924 13295774 ~ 13298682 (+) True AMCG00005035
AMCG00005033 mRNA upstream 493582 13111217 ~ 13119024 (+) True AMCG00005033
AMCG00005032 mRNA upstream 583810 13018537 ~ 13028796 (+) True AMCG00005032
AMCG00005031 mRNA upstream 657738 12950503 ~ 12954868 (+) True AMCG00005031
AMCG00005058 mRNA downstream 2830 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005052 mRNA downstream 280531 13922227 ~ 13941911 (+) True AMCG00005052
AMCG00005050 mRNA downstream 315006 13956702 ~ 13964422 (+) True AMCG00005050
AMCG00005051 mRNA downstream 420683 14062379 ~ 14063936 (+) True AMCG00005051
AMCG00005053 mRNA downstream 440004 14081700 ~ 14082904 (+) True AMCG00005053
TU182286 other upstream 831436 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 1949238 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 5881606 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 8188485 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 9240517 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 1742547 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 4123561 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 5937877 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 6540658 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 6631817 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile