RNA id: TU182538


Basic Information

Item Value
RNA id TU182538
length 1715
lncRNA type sense_over
GC content 0.40
exon number 1
gene id AMCG00005060
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14155155 ~ 14188329 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAGAAGACTTGATCAACGCATCCCTCTGCAAGATAAGGAATGAAACATGATCGgttttatatcaataaataaaaacagcagtggAATAATGGTTCTGTGCTGGTCaacaaaaatgcatgaaaaacatTATGTGCAACTCTCCAAGAGCCACAGTGCTCAAATTTATTTCAAATCTCTCCCTCAGACTAGATCCCGGTCACAACTATCAGATTAAACTGCTCCTCTGAAGCCCCATTGTCTTGGATTACCAAACCTGAGCAACTGCCTGTGCATTGGTGCTAAAGCTCCCGCCACTGTCTGCAGCAGCTGGTGCGCAGTTTATGACGGCATTAATGATTTGCGGTGCAACCGGAGATAAGCTTGCATGACCTCTCCTGGCAGCAGCGGCATTGTAAGAGCAAGCAGAGCTGTAAAGGCTTCACAGTGTAAGCCTTCTTATTGCAGGTCAATTGTTTTATGCAATCTAGAGAATTAGGACCGGCAGATCAATACTGTTCGCTTGTATGCTGGTGGAGGGCGAGGAAACAATACAGCAGCCACAGCCTCGCAGTCACGGATGTTGCTCTGCGTCTGCCAGCATCCCTGCTCTAAACCTGTGGTCTGTGTAATGCTTAATCCATCATATGGCGATACATTTGGTGCTTTGAAAACATGCAGAAGGGTGTCTGATCTGCAGAATAAAGCCGGATCAAAGGGCAGGAAGTACAAACAAAACTCGGGAGTTGAAATGTGCTGCATTCATTTGGCCCCGGCTAGCGTGAGCCTTTTATTTGCGAGACACGGTTTAAAATTGTCTGGTCTGGGATTTGTCCCACATGCTCATACCTCTTCAAAAGCCTGCCTACCCTACATTCAATCCATGTACTGGGAAAAGGTCTGTTTGAAAAAGGGTTTGTAATCTTCGCTCACATTTCTCCAAGTTCACTCTGTTCAATTAAACATGGGAGTCTATCAAACAAAGTTTTTTCACTGCAGTATTTCCTTTCATGTATGTCATCCCACACGTTTTAGACATGTTCACTTTTCATTtgacatataaataaaactcattCTGAATTGGTTCTGTCACATTCAGGGAAGCAGGTAAACTTTCATGATGAAGGCATTAAAGGGGACCGCTTTATGGCTGAACGTTATGAGCAGTAGACAAAATGACAGAACTTGTGTGTTGCCCATCTTCATATTTTGCCAGTGACCCATTTCCATGCAGACCTTTGCTGTTACTCTGTACTTAACTGTTCAGGTATATAATTAATGTGTCTATGGCTGGTACATGAAATGAAGAGCagaatctgaaagaaaaaaatatatattaagacaTAAATAGTACAGAACTCCATCAAtgttcttttttacttttactttttacttttttttaattacttttataactattttaataatCCTGTTGGAGGGGAATGTGGATAATTGTGTTCCTGAGCTTTCTAATGATACAAGGAATATCTCACGGTACAAAGTAGTGTTTTAAGCACAAATCCACTAAAAGGCATCCTGTAGGTTTCCGAAATTACATTGGACATGTTGAGCTATTGTGCTGATTTTTCTTGTAAACTCTCTTAGCTGTTATCAAGCAAATCTAATCGCTGTTGGTTGTCTCTACAAGAGGTGCGCATTCCTCAAATTGCTGCTGATGAGAGAGGTGTGGTGTACAATACAAAGTTTTTAAGTatattcatgtaaaaataaagattaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182456 lncRNA upstream 613141 13573242 ~ 13573460 (+) True G145067
TU182404 lncRNA upstream 868749 13315378 ~ 13317852 (+) True G145039
TU182378 lncRNA upstream 927525 13257717 ~ 13259076 (+) True G145017
TU182366 lncRNA upstream 978384 13205340 ~ 13208217 (+) True G145007
TU182313 lncRNA upstream 1237628 12947182 ~ 12948973 (+) True G144960
TU182563 lncRNA downstream 15819 14204134 ~ 14204512 (+) True G145147
TU182707 lncRNA downstream 488394 14676709 ~ 14677597 (+) True G145251
TU182730 lncRNA downstream 589923 14778238 ~ 14791127 (+) True G145268
TU182742 lncRNA downstream 650269 14838584 ~ 14861156 (+) True G145278
TU182745 lncRNA downstream 657773 14846088 ~ 14852741 (+) True G145281
AMCG00005053 mRNA upstream 103697 14081700 ~ 14082904 (+) True AMCG00005053
AMCG00005051 mRNA upstream 122665 14062379 ~ 14063936 (+) True AMCG00005051
AMCG00005050 mRNA upstream 222179 13956702 ~ 13964422 (+) True AMCG00005050
AMCG00005052 mRNA upstream 244690 13922227 ~ 13941911 (+) True AMCG00005052
AMCG00005058 mRNA upstream 538778 13644526 ~ 13647823 (+) True AMCG00005058
AMCG00005059 mRNA downstream 140533 14328848 ~ 14370657 (+) True AMCG00005059
AMCG00005061 mRNA downstream 190393 14378708 ~ 14391257 (+) True AMCG00005061
AMCG00005065 mRNA downstream 211866 14400181 ~ 14406821 (+) True AMCG00005065
AMCG00005062 mRNA downstream 245667 14433982 ~ 14452508 (+) True AMCG00005062
AMCG00005063 mRNA downstream 264427 14452742 ~ 14475907 (+) True AMCG00005063
TU182286 other upstream 1405431 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 2523233 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 6455601 7729389 ~ 7731000 (+) False AMCG00004870
TU180621 other upstream 8762480 5423703 ~ 5424121 (+) True G143626
TU180426 other upstream 9814512 4371709 ~ 4372089 (+) True G143471
TU183002 other downstream 1195928 15384243 ~ 15384612 (+) False AMCG00005105
TU183561 other downstream 3576942 17765257 ~ 17771525 (+) True G145932
TU184056 other downstream 5391258 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 5994039 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 6085198 20273513 ~ 20279786 (+) False AMCG00005272

Expression Profile