RNA id: AMCG00005064


Basic Information

Item Value
RNA id AMCG00005064
length 2814
RNA type mRNA
GC content 0.47
exon number 10
gene id AMCG00005064
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14391236 ~ 14395883 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCGACAGTATCCGAGAAACAACACCCCCGCTGCAGCAAGTGGAGTAGTCCATCTTTCCTGACAGGCGGCCAGTGCATAAGTGGCGGTTACGACACGAAGGACAGTACCCGTCAAAGCGGCGCATTCAAATTgtctttaacaaacaaaaaaatatcaaataaaatggcGTCGGACCCACTTTCTGCACTACCACCGACGGGGGACGCCTTGAAGCAACGACGTTCAGCGGGAGTCGAAGACAAATCCCCTAACATGCCCGACAGGCCCCGGTTAACGCCTCGGTCCGACGCCTCGTCGAGGACACCGACCCCAGTCCGCCCGAAGATCGTGCCGGCGAGAAGGAAGCTCCTGACGCCCAACCCCGACGGGGAGGAATACGACGAAGCCACCGAGGAGGCGATGGTTTTGCCGCCGATTTACACCTCTGGTCGGCGGTATAGCCAGGCTGAGAGGGTCGCCCTGTACTGCGATCAAATTCTAGGCCAGTGCAAGGCTGAAGATGCCGAGGAAATTTTAAGCAAATATCTGATGGGAAAACTAGCAGCCAAAAGGTCTTGGGTGGGAGTTTGGACCGCAAACCCGGGGCTCTTCCTTGTAAACCAGTATGAGGATATATCTGATGTTGGTGTTCTGGTTGAAGTTCATGGCAAACCATGTCAAAGCAAGAGTCTCCCTCTTCAAGTCATGGTCTCCATAGCCGAGCCCTTCTCCTCCAGCGTGGCCAACCTGCCCCGGGATCTGGCTGAAGACGTCTTGACCCTACAGGACCACTGTGTTTCCCTGCTGGATGTGTATCCCATAGAGGCATCGGACCCTGCAGTGAAGGACATCGCCCAAGCCCTGGAGAACGCCAGGTTTTTCTACGATTTCCTCTGGAGAGACTGGGATGAAGAAGAGGATTGTGACGACTACACTGGACTTATTGAGAAGCGCGTACAGCTGCACTATGACATTGAGCAGGGGGCTGTTCCAGGATCCATCGGCGACCGCTTCAGAAGGACGCTGAGAAAGTACAAGAATAAAAGACTGGACCTCCAAGAGTATCAGAGCAGCATTAAAGGGAATCCCTCGGCAGGGGAGGCCGTTGAATGCTGGAAGAAGCACTTTGAGATCTTAATGCTCAGGGGCTTGCTGAAATTTTGGGAAGACCTCAACCTcagatCATATGGACCCTGCCTTACAAGAATATCTAAACACAGACGACAGAGAGATTCAGGACAAGTTGTCACTCACATTGTTGCCCAGATGATGACAGCAGACATGGTACAGAGCTTCTGTGCCGACACCCTAATTCAGCAGCACGCCAGTCTGTCCGCAGCGCTTAGCGCCTGCTTCTCTGGGGACACCGTGCTGCTCTTCCCAGGGCAATATCAGGCCCCTGCACTTGACTGTCTGGCAGATGACATCATTATTAAGGGAGCTGGAAACAGAAAAGATGTAGTTATTGTGTCAGATCCATCACAGTATAGCTTTGTGGCGTCTAAAGCTGCAGATGTCACACTGAAGAGCCTCACTTTGGTGCAGTGTGGCACCTGTGACGGCGCTGTGGTGGTGGAGTGTGGCCACATGACCCTGGAGGACTGTGTCCTGAATTGTGAAGGCACTGGGGTGTGTGTTCTGGCAGGGGCGACTCTGGTCCTGAAGAACTGTGAGATTTCTAGTGCTCAGGGAGCAGGAGTTGAACTGTATCCTGGAAGCGTTGCCGAATTGGAGGGGAACAATATTCATCACTGCTGCAACCTGAGCAAGAAAGACATCCTGGAGCCATCACTGGGAGGCATCAATATAAAGGTTCTCCCGGAGCCagaagtgaaaatgttcaacaaCCATATTCACAACAATCGGGGTTACGGAGTGGCCATTCTTATGCCAGAGAATCCCCATAAAGCACAGAAGGACGGGCCAGAGCATCTCGCAAGTggggagaagagagaaactGATCCTCTCTCAAAGGCCCTGGAGAAACTCAATCTCGAAATGATTACtaataaaatggaaagcaaTACCATGGGAAGTTTTGGGGTTCTTCACAAAGATTACGTATGATTTCACAACGAGAGATTCTATCTatgtaaatgttcattttaattcgGTTAATGATAGTAATTGTGTTCTTTTAAGATTTGCGTTAGTTAGTCGTGGAGAACAATACCAGTTGGTCTACATACATATGAATGGAacttatttgatattttaatgacaatttAATCTAGATGTTTGTGTTCAATTGCTGTTCAACTGAATGACAAAAGTGTTCATAgaaattgaaacaaattaatttaattttaagaacGTTCTAAACTCCAAATGCAGTTCTGATGTTATTGAAAACATGTATGTTCTGTGTTCCTTTCTGAAATACTACATGCTACACGCTCATGTATTAGTCATGTGTATAGCTGGAAGAGGCAATAATACCattccagaaaaataaatcttagatatttattttaaataaagtttggtCAAAGTTAACTTATTGATCTACTGTATCATATCATTTATTGCATTCATATATAATCCTGGTACATCCCACAGCCTGGTCTTTGTTTCAGCTGAACAGAACAGAATGTCATATACAAGGAGGTGGAAATCTGGTATTTTACATGAATTGCAATGGAAAAGTCCTACAGCACTAACTTCATACGGAgtcaatcattaacaaaaaacatgttctgaGGGAAAGTCTGACAGGAAGTAAACATAACCACTTCAACAGAGTATAACATGCTCTAGAGCAgaatttatgaaaaacaaacaaaagctgcGTATCTTTTGTACACGGTTGCTTTCTaaaacccccctccccctctg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182564 lncRNA downstream 186747 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 207723 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 229260 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 328113 14062865 ~ 14063123 (-) True G145131
TU182540 lncRNA downstream 328612 14062344 ~ 14062624 (-) True G145130
TU182594 lncRNA upstream 31083 14426966 ~ 14455083 (-) True G145173
TU182835 lncRNA upstream 672530 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 709335 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 749915 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 857630 15253513 ~ 15254888 (-) True G145434
AMCG00005054 mRNA downstream 301896 14082458 ~ 14089340 (-) True AMCG00005054
AMCG00005056 mRNA downstream 315603 14066698 ~ 14075633 (-) True AMCG00005056
AMCG00005055 mRNA downstream 329574 14050704 ~ 14061662 (-) True AMCG00005055
AMCG00005046 mRNA downstream 560890 13804007 ~ 13830346 (-) True AMCG00005046
AMCG00005047 mRNA downstream 646607 13739454 ~ 13744629 (-) True AMCG00005047
AMCG00005070 mRNA upstream 84524 14480407 ~ 14483193 (-) True AMCG00005070
AMCG00005069 mRNA upstream 148939 14544822 ~ 14552948 (-) True AMCG00005069
AMCG00005071 mRNA upstream 187260 14583143 ~ 14618511 (-) True AMCG00005071
AMCG00005073 mRNA upstream 225297 14621180 ~ 14625015 (-) True AMCG00005073
AMCG00005072 mRNA upstream 229361 14625244 ~ 14633980 (-) True AMCG00005072
TU182413 other downstream 1054490 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2234858 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2234858 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5484642 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5550248 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 568696 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4618664 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 5174176 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 5362349 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5624827 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile