RNA id: AMCG00005074


Basic Information

Item Value
RNA id AMCG00005074
length 2568
RNA type mRNA
GC content 0.44
exon number 5
gene id AMCG00005074
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14701348 ~ 14705852 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CAAAGGGGTCCTAGATTGGGACCTGTACGTGGCAGCTGCTCAAAAATGGTTCCCTAGTAATGCGGAATTGGAGTGAAGCTGTTTAgggaaatgtttctgttttgtttcaacggtttgtgtgtttttatttttacttgacACTCCGAGTTGCTTTGCTGGGGAGCCGTGCAGAGATGGCTGCGTGGGCGGGCTTCTCGGAGGAAGAGCTCCGCCGATTGCAGTATAAAGCAGATCAGGTGGCACTGAATGCCTCCAGCCGGGGCCGCAGACCACCTCCGACCAACAGGAGCCGCCAGCAGCTGCAGCGAGAGAAGGCCCTGCAGGTGGCAACCCAGCAGAACGGCCCGGCTCCTCTACCAGCCGAGCAGCAGCTTGCCAAGCCCAAAGTGCCGGCCCTCGCCCAGAGTCCTCCAAAGACACACCAGGAGAATGAGGCTCTCCAGAGGAGCAGGAGCGTGGAGAGCGAGCAGGGAGCCCAGGGCCAACGCATGGCCCTTCCCGAGGAGGTTGCTCCACTTGCCAAGGAGCTAGAGAAGCAGGAAGTGGAATTGAGAGAGAAGACTCGACTGGAGCAGCTTCAACAGGAACAACGATTCATGGAAGAGAAGAATAAACGCAAGAAAGCCCTCCTATCGAAGACCATTGCTGAGAAGTCCAAACGGACACAGGCGGAAGCTATCAAACTGAAACGGATCCAGAAGGAGCTCCAAGCCCTGGATGACATGGTTTCCAATGACATCGGTATCCTGCGAAGCCGCATCGAGCAGGCCAGCTGGGACTACTCGGGTGCTCGAAAGCGTTTTGAGAAGGCAGAGGCCGAGTACGTGGCGGCCAAGCTGGACCTGCACAAAAAGACCGATGTGAAGGAGCAGCTGACGGAGCATCTCTACGCCATCATCCAGCAGAACGAGCAGCGCAAGTCCAGGAAGCTGGAGGAGCTCATGAAGCAGCTGGAGGTGGAGGCGGACGAGGAGGGGCTGGATCTCGAGATCGAGGTGGAGAAGATGCTTCATCAACAGGAAGAGGAAGCGAGGAGAGCCCAGGCGGCCGGGCAGGAGAACATGCCGGCTGCAGGGCAAGCCACGGGTGACTGCAGCGATGGTAGTGCCCGTACAGAGGGGGAAAAACCAAAGGACATTCAGCCTCCCGAATCAGGGAACGAGAAGGCTGGTCAAGACACTAAATTACAAAACACTAACTCTCATCATGAAGCTGTAGGCGATGAAGTAACTGTCTCTGTGTCgtgagtttaaaacaaaaaaccaaGGAGTCTAGCCAAATTtgatatgcaatttaaaaatcacatttagtCTGTTTAAATGGGTACTGTAATTCACCTGAAAAACTTCACTTAACTTGTGCAGTAAGTTTTTCTTCagtcattttattaatatgtggGATTTATGTAATCGAGTATTATTCAAAAGGATGTACAAAGCTAGCATTTGTCACTTCATCTGTCTTTttgcattttctgaaaatatattttggatcCTAACTCACCTGGACATATTCTGACGTGTGAGCCTTAGTGTGCGGGtcaatgttttatgtgtgtCTTGCAGTTGGGTAACGATGCATGCACTTGGAGTAAGTGTTCCTTGATTTCCTGTTCTTGCTTGTGTAGTTTACTCTAGTAACATGAATAGAAGCATGTCCCTTGAAATGTTTTGGATATGCATTCTAGATGTATACTGCAAAATACTTCaactttaaaatagtttaactaaaagcatttgaaaagcaTTATTCCTATTAGAGAGATCCTAGATGAATAACCCAGTTTACACTTTGAGAATCTCTTCAGTTTGCTCATCTGTTTGAGATCCTTACACAATTAGTTTCAACTCATCGGGAAAATGTAAGCAGCAGCAaccatttattatattaaatcagTATTTGCAGAccataacaaaaatgtatgcttCCTTTAAGACTCTTACTCTTAAAGGCATTATTTGGTGGCCATCTCTTTGCCGTAATAGGTGTGGTTTTAGATTATATTATTGTGTACCGAAGTGTCCTTTTTAGTTCAAATGAATGTAATACAACTGCTTCCTGCAGCTCACTCATGTTGTGCGTACTGCATAGTTTTGTGTATCAAACCTTAAGGTGAGGGCATTTCTAGACAGAATATATGTATCGTTTGAATGTAGGTGTCTCCTTGGACGAAATGGAAAAAGTAAGTTTCATGTTTTTAGAGAAGCTTGGGATACTCTAGGTTTTATGGTATTAGAGGTAGAAGCAGATAGGCAATGTACATGCACTATTTCTGCTTTTGTCAAGGgactttatttcaaatgttttttaaattgattattgtAATATTCATGTGAAATTGTTTCGTCTGTAGATTGTTGAACACTTTATATGTGGATCTCGCACATGAAAATGGTGGCTATACATATCACTGTAAATTAAACGTAATATACACTTCATATTCGATTGTGCTTTGCTGACCACAGGTACATTTGAATTACTGACACCATTATTTAAGATCATGACCTTCATTGTTATTGtaaatttcttattttgtataataaaatgtacctttttcTTCAAGTTAAA

Function

GO: NA

KEGG:

id description
K19748 GORAB, SCYL1BP1; RAB6-interacting golgin

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 246265 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 496859 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 517835 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 539372 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 638225 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 362561 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 399366 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 439946 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 547661 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 550037 15255889 ~ 15257664 (-) True G145436
AMCG00005075 mRNA downstream 10395 14677660 ~ 14690953 (-) True AMCG00005075
AMCG00005072 mRNA downstream 67368 14625244 ~ 14633980 (-) True AMCG00005072
AMCG00005073 mRNA downstream 76333 14621180 ~ 14625015 (-) True AMCG00005073
AMCG00005071 mRNA downstream 82837 14583143 ~ 14618511 (-) True AMCG00005071
AMCG00005069 mRNA downstream 148400 14544822 ~ 14552948 (-) True AMCG00005069
AMCG00005076 mRNA upstream 29987 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005081 mRNA upstream 65710 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005083 mRNA upstream 100065 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005082 mRNA upstream 133542 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005077 mRNA upstream 258562 14964414 ~ 14969242 (-) True AMCG00005077
TU182413 other downstream 1364602 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2544970 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2544970 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5794754 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5860360 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 258727 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4308695 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4864207 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 5052380 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5314858 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile