RNA id: AMCG00005075


Basic Information

Item Value
RNA id AMCG00005075
length 4042
RNA type mRNA
GC content 0.42
exon number 4
gene id AMCG00005075
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14677660 ~ 14690953 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AATTTTCATTTATTCCCCGTTCAGGCTCCCCCTGCATGCCAGTCTGTGCCGTTTGAAGTGCCAGAGAGTTCCTTGATCCGACTGAGAGAAGAACTCGCTCCAGAAAGCGGCGATATCCAGCCTTCTTCCACGCAGAGTGCAGCGAGAGCGCTTACTCACTTGGACATCTGTTAGACAtcatctttttttctgtaaccTTAGTCATTCGTGCTTGTGAGTCAACGGGAGTAAGAAAAGAGCAGCTTCCCCGGGAGATGTTGTGAGATCCAGAGGTGCTGTGTGAGGGAGCGTATGGGAGGCTGTGTGCGTGGAGAGGGGCTGAAGCAAAACCTGCGCAAAGACTCGCGTTTGGTCCCTGTGACAAACTCACCGAGAGCTCAGTAAAGCGTCACTGCATCTGGATCTGTACAACTTTGAACTgagttttttcttctatttttcttgcttttgtaAAGAAATTGAGTTGGAGCTGGCGCCTGCACGCTTTGTATGTAAGGAATAACTTTGGggggattattattaatattattacatacTTTTCTTGTGTATTCTGTTTGCGTCATGACTTCTAGTTACGCACATGTAATGGACAGACAGCCTTCGCTATCTAGCCGCTTGGAGAGCCCGATTACGGCCAATCTGGAAAACCTACAGGCGAAAAAGAACTTCTCTGTGAGTCACCTGTTGGATCTGGAGGAAGCGGGGGAGATGGTGGGCACCCAGGCGGAGGAGAGCGCCGGGGAGGCGGGACGGAGCTTGCTGGAGTCCCCGGGGCTGACGAGCGGCAGCGACACCACGCTGCAGGAGAATGACCAGTTGAACtcggaggagaagaagaagagaaagcaGCGACGGAACAGAACCACTTTCAACAGCAGCCAGCTTCAGGCCCTGGAGAGGGTGTTCGAAAGGACGCACTACCCCGATGCCTTCGTACGGGAGGACTTAGCTCGCCGGGTCAATCTTACTGAAGCACGTGTCCAGGTGTGGTTTCAGAACAGAAGGGCCAAGTTCCGCAGGAATGAGAGGGCCATGCTTGCCAGTAAGAATGCCTCCCTCCTCAAGTCATACTCCGGGGAAATGACGGCAGTGGAGCAGCCAATAGTCCCACGCCCAGCCCCCCGACCCAACGACTACCTGTCCTGGGGCACGGCCTCGCCATACAGTGCCATGGCTACCTACACACCCACATGCGCCAACACCAATACCACCCAGGGAATGAACATGGCAAATAGTATCGCCAACCTGCGCCTCAAAGCAAAGGAGTACAGCTTAAACCAGGTGCCCACGGTCAACTGATGGGAAACAAAACCCAATTTGGCACCAAGGGATTATTATTCTACCAGTTTCACAGAGAAGATACTCACTAGACTCACCAAACTCACAACCAAGGTTGAGGCCGAGTCCTTggctggtaaaaaaaaatccatcccTTGGGAATTACAACGAAAGCTTTCACTCGCTGGTATGTCTTTCTATTGACAAATTCTTTCCAGATGCTTGTTGTACAGTGTGAGACTGAACAAAACTTGAAATGTCTGAGAACATTTAGTCTGTGGAAGATCAATACATGTTTAAGTTAGACATTGAAAATTGTGGATGCAGTAACTTTGATAAATTTGGAACgaacataaatacttttttcccattCTGAGCATAGAAATCCTCACCATTTAAATCCACAACGGAACAATTGCGGTAATTACTTTAGCCACCTGAGCAATTTGCATCTCTGGTCATTTCTGGAGACTTTCAAATGGAAACCCTTACAGCTGTTTACAACACCAGACATCGTACACGACGAGAGCCTCCTACCCCGCCCTCAAACACCTCCCTTTGGATTAAAATATCTGACGCAGATAAGCATCTGAAATCGCAAAAATGGACACCACTGGGAGCATAGAAGAACAATGTAAAGACTGGGAagttataaacatgttttatattgttattattttgtatttcgtctttacattttataccactgacaaacacatttcATCATTGCATTGTCCTTTATGTAATGTACATTATACAGGCAAGCTTGTAACTCATATTGAACAAACAGGGAAAACAATTACGACATACTTTTGAGCACAAGACCaagttgctgtttttctttgtattaaatCATTATATGTATCTAAGAATCCAATATAATAAACTGTGCAGTTCAAGCCATGTAGTGAAACTGTATTACACAACGTCTGAACTGGACGCGGTCATCAGTGAGAGGGAAACCTGTCAGCTTTGAAGTGCTGATAGCATGTGTGTTAACTTTCTGCAGCCTTGGAATGGGAAGACTAGAAACACTGGCCAGCTAGAAAAATGcacttgtattttttctttatctgtgtTATCTAAATGATATATTCCCATTGAAATGCAACTTCTCTACAAGGGTCTGTTGCTGGCAACAGTGATGATATGAAGGAAAATGAATCATATAAACATGGGTTTTGCTAATCATTGTACAGTATTACAGCAGTACAGAAAAAAGGTCATTTAGaataaatatctataaaataatgttgttgtgttttataatgactctatgattttattttaataatacattacagatGCATAAACataagaagaataaaaatacataattagaaAGTACATGTTTCTGTGTCAGTTAAAAGTGCTCTGTTTTTCCTGAGGGAGGTTGACATCACTTTGTGAGCTGTAGCCACTATTCGTATTGTTTCCATTATTTCCAACATAGTTTCAAAGCATTTGTTCACATGTTTTCTTCGgttaaatattatgttttagaaacaggaagtggtttataaaatgaatatttctCTTACACAAGGTAATAGACCAGGACTGACAGATGAGCgagaaatataacattttaaatcagcagaacaataaacactttatttataatgaCATACATGCATCTCTAGTTCTGACTTTTAGATTGAGTTCCAGATGATGCCAGTTTATATAGAAACAAGGGCTGAGGACAGATCTCTTTAAAGACCATGTGCTCACTGAAAGTACTGAGTCGTCCTCTGGTCAAGCTTTTGCAGATTTCGCTgaatggaaatatttattttaaaaacaacatttttatgaTGCAGGAAATCCTTATTTCTTTTAAGTGGACCCTGTGGCCTCATCTGGTTTAAATGCTGCTGTAATGTTATTTCTGCCTAATGTTCTTCTGATATTGCCACTTGCATGTGATAGTTCATGCTTTCTCCGCACACCCTGATGAGAGCTGCTTGATGTTGTAAGCCAGCAGGGGAATTCAGCCTCCCTGGGCTTCATCTGGCCTTAAAAACCTCGTGGCAGCTGATCTTTTCTGTGCTTCTTTGATCTCagactttttaacttttatttttggaagaagaaataaatgtttttcagaaatatGCAGGTTAATGTTTAAGCAGTATGCCTTcattgccatgttttttttttctctctcttggtaattcattaaaatgcatttataggcctatatataaacCAACATTATGGTTTATAGACATTCTGCAGCAGGATATTTgctgaattaatacattcatatctGTAATTAGGTCCGTTTCTGAACTGCCCAAATTCTGAGTTGTGCAGTCTTTCTCATGACAGGCTACAGCTGTCAGCATGGGATTCCTGGTGCCATCAGAGCCAGCCCAGAGCGCCATCACCTCTCTCTCGTGTCTGGGTGCTGTTTTAGCTGATACGGCACTTTGAAAGGAATGCTTCACTTCCCCAAAACGGGAATGTGTGCCCTCTTGACATCACATCAAAATTATACCAGCTGTACAGCAGAAGCTTCTATTTGAAAAATGAGACACAATTCTTtccagtacattttaaaacgtATCTTACTGAGGGGAGAAAATGTTAGAGGTTTGCATATAGGTGTGGAGAAAATTTGGGTTAGAATCATGTTTGCCTGCTGTACACTTAGACAATAATGCATTAGAGAGCAAAATCCATGATCCTATCTTTACATTACATGGTTCATTTATACCAGTCCCGTTCATTGCAAGTATGTTTTTTACTATTAAAATCC

Function

GO:

id name namespace
GO:0010628 positive regulation of gene expression biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function

KEGG:

id description
K09329 PRRX, PMX; paired mesoderm homeobox protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 222577 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 473171 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 494147 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 515684 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 614537 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 377460 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 414265 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 454845 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 562560 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 564936 15255889 ~ 15257664 (-) True G145436
AMCG00005072 mRNA downstream 43680 14625244 ~ 14633980 (-) True AMCG00005072
AMCG00005073 mRNA downstream 52645 14621180 ~ 14625015 (-) True AMCG00005073
AMCG00005071 mRNA downstream 59149 14583143 ~ 14618511 (-) True AMCG00005071
AMCG00005069 mRNA downstream 124712 14544822 ~ 14552948 (-) True AMCG00005069
AMCG00005070 mRNA downstream 194467 14480407 ~ 14483193 (-) True AMCG00005070
AMCG00005074 mRNA upstream 10395 14701348 ~ 14705852 (-) True AMCG00005074
AMCG00005076 mRNA upstream 44886 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005081 mRNA upstream 80609 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005083 mRNA upstream 114964 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005082 mRNA upstream 148441 14839394 ~ 14852815 (-) True AMCG00005082
TU182413 other downstream 1340914 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2521282 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2521282 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5771066 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5836672 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 273626 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4323594 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4879106 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 5067279 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5329757 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile