RNA id: AMCG00005077


Basic Information

Item Value
RNA id AMCG00005077
length 2694
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00005077
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14964414 ~ 14969242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGAAGAACACCGTGTCCGACCGCTTCAGGAAGGTGGATGTGGACGAGTACGACGAGAACAAGTTTGTAGACGAGGAGGATGGTGGGGAGAACCAGCTGGGACCCGACGAAGGGGAAGTGGACTCTTTAATCAGACAATATCCTTTCAAACATGTCGCTTGTGCAGTAAATGTTGCGAGGCTGGGCCGTGGCCGGCGGGGGGACAGGCCGGGGAACTTGATGGGGGCTCTGCAAGCTGTCCTGAAAAACCCACCCATCAACACGAAGAACCAAAACGTCAAGGATCGGGCGGAGGGCCTGGTTCTGAAGGTGCTGAGCTCTTTCAAGAGTGGCGACATTGAGAAAGCTGTGCAGTCTCTGGACAAGAACGGTGTGGACCTCCTCATGAAGTACATCTACAAGGGCTTCGAGAAGCCCTCTGAAAACAGCAGCGCAGTCTTGTTGCAGTGGCAtgaaaagGCCTTATGTGCCGGAGGGGTCGGCTCCATCGTTCGAGTGTTAACTGCcagaaaaacagtttaatggCAGCCTGGAACAACTCTGCATTACAGAGGGATTTGCTGGTACAGAACCAAGAGCTGGTTCACAGGGCACTGTGAAGAGGACTCCTCCATGTCTGTTCTTCCTTCCTCCCTTCATCTTTGCTTGCTTAAAACTTCTTCCGTTCTATTATTTAACGGCTCTGATGCTTCCTACTCTGGAGCGACAGAGTCCTGCGCTTCTCTCCTGTCATTTCTGCCTTCCCAAATTATACAGCCTCACACAAATACTGCGCCGCCTGCtatattaagaagtttaagaTCTCTTTTCAAACTAAAAAGTAGCCAGTCTGCTAACATGTCGATGTCATCTGCACTCATTCTGGTTTGACATAGTCGTTCTCTTAATTGTAAATGAAGGCCAGTCGCTCTTCTCAGGAACCTCTAGAATAAAAGCTTCCTTAGTCGGAGAGTAGTGTTCTTCGAGCAGACTGGCCATTTCAGGGGATTCATTTTTGTATCCTAGAATATCCTCTATCTGTTAACATTATATTATACCAACTAGCTTAACCATTCCAGCTCACAGATGGAGCCACAGCTTCTGATGGAAGCTGCAGTGTGACTTCTGCTGCAGGGTCATGTCTAGTGTGAACGAACGACCCTCCGTGTGGCAAAAGATTGCATTTGTATGCTTCTTGGGGCCATTATGAGAATAAGggcaatgcattgtttttttgtgcttaaAATTTAATGGTATCACCTTAAAAGGGATTAATTTATTGCTGTCAAAAACAAGTAAACCATTTAGCACAAGAAAATATGCCAAATAATACTCAGTACATGTTCATGCAACAAATCTATACACAACCAATCACAGTTTACCTGGATTTAAGTCTGTGAAATTACGGTTTGATCATTTCTTGTTAGgctgatttattttgcttattctGTTTTCCAAATGCATTGTAAATCAATTACCTTATGCATGAGATGTCtctctattttctgttttctaccATGCTTACTGTACCTGGTGATCCGATTGTATCTGGtatgtttaaacacaaaaaaaaatccaaaacattatttaattttaagtatttGACCTATAAATTGCATCAGCCTTCtatctaatgttttttttgccaaaacaatgttttgtttttggtttttatcCATATAATCTGCTGGGTATCACAAAAGCCGAGTTAATTGTTGGCCCAATTGATCAAGCTTCTTATGTTCAATTACAAAGTATGTCAACTGTCAGATCAGTATTACTCTACTTCATGTGTATCAGCCAAAAGTAGATTTGCTGCACAATGTCTTTAAATCTCTGAAGATGTCATTGGACCAAAATATCTCCAGTAATTTGGGTTATAGTAAGTCTTGCTTTGCTGATAAATCCGTGTGTTTTGTACATTAGCCTCAATAGGACATACAGAACAAACCgtgcaataaaaacaatgtaaaatctTTTAGGataattgttttacataaacaaaaacctgATTCCCAGAGTTAACATTACCAAAACTATTATAGTTTTCAGACTGGAGAATATTTTATATTGGTACTATTTGTATGTTGTGATCAAATCAATTGTGGATTTTGCATATTATGTCTAGCCAAGCACTTGGATCTGTAACAATTGATTGACAATACAGGCCCAGCCTGCAGTGGAGTTGGCTCACGGGttgatgtttaaattgtattctgtaTCGCGTTGTTTGGAGAGAGAACactttgatttgtatttctcATTACATCATGTTATGGTGGACAACTATTTTCTATGTTTGTTCATCTTACAAAATTTAAATGATCAACAATAGAAAGGCTAAACAAATTCTCATATTGATTTGTTACAGAAATGTTGGTTGCCCTTGTTTGTGACCAAGTGCAAATATACCCATCTGGTTTACAGACTGCCTTATCAAATATTCCTTTTATGTATGTGCTTTTgtgatacaataaaaaaatatatagttgtgACACACTTTAGTTGTCTGATatgttcattttcatatatagaGTTGAATTTCTTacctgtaattttttttttttttctccacactgATTGTACTTTTCACAATAgttcattttgatttctttgtgTTATTTAGCAGAGTGGGATATGTTTAATGCTGCATTAGTAAATAGCTATATTTAGGCTGTTTTTgcatcataataaaatacagtgaatcagtga

Function

GO:

id name namespace
GO:0030833 regulation of actin filament polymerization biological_process
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component

KEGG:

id description
K05754 ARPC5; actin related protein 2/3 complex, subunit 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 509331 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 759925 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 780901 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 802438 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 901291 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 99171 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 135976 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 176556 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 284271 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 286647 15255889 ~ 15257664 (-) True G145436
AMCG00005082 mRNA downstream 111599 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005083 mRNA downstream 152145 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005081 mRNA downstream 179572 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005076 mRNA downstream 222484 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005074 mRNA downstream 258562 14701348 ~ 14705852 (-) True AMCG00005074
AMCG00005099 mRNA upstream 6009 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005098 mRNA upstream 73790 15043032 ~ 15056977 (-) True AMCG00005098
AMCG00005100 mRNA upstream 105430 15074672 ~ 15080833 (-) True AMCG00005100
AMCG00005089 mRNA upstream 124713 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005087 mRNA upstream 148515 15117757 ~ 15119251 (-) True AMCG00005087
TU182413 other downstream 1627668 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2808036 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2808036 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6057820 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 6123426 8836360 ~ 8840988 (-) False AMCG00004894
TU183873 other upstream 4045305 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4600817 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4788990 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5051468 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 5051468 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00030781 True 3433 mRNA 0.38 4 NC_007113.7 20967673 ~ 20975677 (+)