RNA id: TU182803


Basic Information

Item Value
RNA id TU182803
length 2344
RNA type TUCP
GC content 0.38
exon number 3
gene id AMCG00005077
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14964414 ~ 14969242 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCCATTGTCCTTAACGCACTTCTGCACAGGGAACTTGATGGGGGCTCTGCAAGCTGTCCTGAAAAACCCACCCATCAACACGAAGAACCAAAACGTCAAGGATCGGGCGGAGGGCCTGGTTCTGAAGGTGCTGAGCTCTTTCAAGAGTGGCGACATTGAGAAAGCTGTGCAGTCTCTGGACAAGAACGGTGTGGACCTCCTCATGAAGTACATCTACAAGGGCTTCGAGAAGCCCTCTGAAAACAGCAGCGCAGTCTTGTTGCAGTGGCAtgaaaagGCCTTATGTGCCGGAGGGGTCGGCTCCATCGTTCGAGTGTTAACTGCcagaaaaacagtttaatggCAGCCTGGAACAACTCTGCATTACAGAGGGATTTGCTGGTACAGAACCAAGAGCTGGTTCACAGGGCACTGTGAAGAGGACTCCTCCATGTCTGTTCTTCCTTCCTCCCTTCATCTTTGCTTGCTTAAAACTTCTTCCGTTCTATTATTTAACGGCTCTGATGCTTCCTACTCTGGAGCGACAGAGTCCTGCGCTTCTCTCCTGTCATTTCTGCCTTCCCAAATTATACAGCCTCACACAAATACTGCGCCGCCTGCtatattaagaagtttaagaTCTCTTTTCAAACTAAAAAGTAGCCAGTCTGCTAACATGTCGATGTCATCTGCACTCATTCTGGTTTGACATAGTCGTTCTCTTAATTGTAAATGAAGGCCAGTCGCTCTTCTCAGGAACCTCTAGAATAAAAGCTTCCTTAGTCGGAGAGTAGTGTTCTTCGAGCAGACTGGCCATTTCAGGGGATTCATTTTTGTATCCTAGAATATCCTCTATCTGTTAACATTATATTATACCAACTAGCTTAACCATTCCAGCTCACAGATGGAGCCACAGCTTCTGATGGAAGCTGCAGTGTGACTTCTGCTGCAGGGTCATGTCTAGTGTGAACGAACGACCCTCCGTGTGGCAAAAGATTGCATTTGTATGCTTCTTGGGGCCATTATGAGAATAAGggcaatgcattgtttttttgtgcttaaAATTTAATGGTATCACCTTAAAAGGGATTAATTTATTGCTGTCAAAAACAAGTAAACCATTTAGCACAAGAAAATATGCCAAATAATACTCAGTACATGTTCATGCAACAAATCTATACACAACCAATCACAGTTTACCTGGATTTAAGTCTGTGAAATTACGGTTTGATCATTTCTTGTTAGgctgatttattttgcttattctGTTTTCCAAATGCATTGTAAATCAATTACCTTATGCATGAGATGTCtctctattttctgttttctaccATGCTTACTGTACCTGGTGATCCGATTGTATCTGGtatgtttaaacacaaaaaaaaatccaaaacattatttaattttaagtatttGACCTATAAATTGCATCAGCCTTCtatctaatgttttttttgccaaaacaatgttttgtttttggtttttatcCATATAATCTGCTGGGTATCACAAAAGCCGAGTTAATTGTTGGCCCAATTGATCAAGCTTCTTATGTTCAATTACAAAGTATGTCAACTGTCAGATCAGTATTACTCTACTTCATGTGTATCAGCCAAAAGTAGATTTGCTGCACAATGTCTTTAAATCTCTGAAGATGTCATTGGACCAAAATATCTCCAGTAATTTGGGTTATAGTAAGTCTTGCTTTGCTGATAAATCCGTGTGTTTTGTACATTAGCCTCAATAGGACATACAGAACAAACCgtgcaataaaaacaatgtaaaatctTTTAGGataattgttttacataaacaaaaacctgATTCCCAGAGTTAACATTACCAAAACTATTATAGTTTTCAGACTGGAGAATATTTTATATTGGTACTATTTGTATGTTGTGATCAAATCAATTGTGGATTTTGCATATTATGTCTAGCCAAGCACTTGGATCTGTAACAATTGATTGACAATACAGGCCCAGCCTGCAGTGGAGTTGGCTCACGGGttgatgtttaaattgtattctgtaTCGCGTTGTTTGGAGAGAGAACactttgatttgtatttctcATTACATCATGTTATGGTGGACAACTATTTTCTATGTTTGTTCATCTTACAAAATTTAAATGATCAACAATAGAAAGGCTAAACAAATTCTCATATTGATTTGTTACAGAAATGTTGGTTGCCCTTGTTTGTGACCAAGTGCAAATATACCCATCTGGTTTACAGACTGCCTTATCAAATATTCCTTTTATGTATGTGCTTTTgtgatacaataaaaaaatatatagttgtgACACACTTTAGTTGTCTGATatgttcattttcatatatagaGTTGAATTTCTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 509496 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 760090 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 781066 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 802603 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 901456 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 100790 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 137595 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 178175 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 285890 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 288266 15255889 ~ 15257664 (-) True G145436
AMCG00005082 mRNA downstream 111764 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005083 mRNA downstream 152310 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005081 mRNA downstream 179737 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005076 mRNA downstream 222649 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005074 mRNA downstream 258727 14701348 ~ 14705852 (-) True AMCG00005074
AMCG00005099 mRNA upstream 7628 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005098 mRNA upstream 75409 15043032 ~ 15056977 (-) True AMCG00005098
AMCG00005100 mRNA upstream 107049 15074672 ~ 15080833 (-) True AMCG00005100
AMCG00005089 mRNA upstream 126332 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005087 mRNA upstream 150134 15117757 ~ 15119251 (-) True AMCG00005087
TU182413 other downstream 1627833 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2808201 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2808201 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6057985 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 6123591 8836360 ~ 8840988 (-) False AMCG00004894
TU183873 other upstream 4046924 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4602436 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4790609 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5053087 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 5053087 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile