RNA id: AMCG00005083


Basic Information

Item Value
RNA id AMCG00005083
length 2687
RNA type mRNA
GC content 0.50
exon number 16
gene id AMCG00005083
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 14805917 ~ 14812269 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCTCTCTACGCAGTTTACGGTGCTTTAGTAAAATGGCGGAGCTGAAGGAAGGAGACGCTTTACAGCTACACCAGGAGGACGTCGACGCAAATAgagCTTCTAGCGAATCTAGGTCTGGAGAGGGAGAAGCGGAGGAGGTGAAGTGTGAGCAAGACGAGAATGCAACCAGTGCCAGTGGAGATGCCCATGACAGTGGCGTCAGCAAGGAGCCAGAGCTGGATAATGGGGAAGCATCTGCATCTTGCACAGAGAGGCACATTTCTATTCAGACTCAGCTGCAAGGACTGGAGAAGCTGGTAGACTTAAAAGGAGCTGGTAGGAAAGCATGCCCACTATGCCCCGAGGAGAAGTTTAAAGCCTGTTACAATCACAAACTGCGCCGCCACTTACAGAATCTGCACTGGAAGGTTTATGTAGAGTTTGAAGggCACAGGATGTGTATCTGTCATCTTCCTTGCAGACAACTGAAGCCAAACCTGAATGGAGATCAGCCTTCAAGCCGATTGGTGGCTCATTACCACTGCATTGTGTGTTCGGTGACCATCGCTCGCAAGACTGACATGGTTAGTCACCTCAAACGCCACGTGAACAAAGGGGAGACCGAAGCCAGCTACACTGGAGAGACGGACTCCTGTGAAATTATGAAGGAGCTGGGCACCAACGTCCAACTGCTTCCGAACTACAGCACTCCACAGAAGAGCGACACCTACTTCAACCGCAAGATGAAAGTAAACAGACAGCTGGTGTTCTGTTCTTTGGCGGTTCTGGCAGAGGAGCGAAATCCACTAGAGTGCCTGGATGCTTTTGGAGCAACAGGCATCATGGGCTTGCAGTGGGCCAAGCATCTGAGCAGCGCGGTGAAGGTCACCATCAGCGACATCAACGAGACGTGTGTGAAGATGATCAGGGAGAACTGCCACCTCAATCACATGAGGGCGGAGGGAGGCCGTGGCCCCCGGCATGCAGACCCCGAGGGcaccgaggaggaggagggtcaCGTAGCCTCAGTTGAAATCATCAAGATGGATGCCAATGTCATCATGCACCTGCGCTCCTTCGATTACATaCACCTGGACCCGTTTGGTACAGCCGTGAATTATCTCGATGCCGCCTTCAGGAACGTACGCAATCTGGGCATCGTGTCGGTGACCTCCACGGACACTGGCTCTCTTTACTCCAAAGCTCTGAACATGACACTGAGGCACTATGGCTCGGCGCGCTGTAACAAGGGCATCGAGGTGCTGTTGGCAGTGGCACTGGAGCACTTTCTCCTGGTGGTGGTGCGAGTGCTGAGAGGCCCCACACAGGCGGACGAATCTGCCAAGAAGATCCGCCAGCTCATCCACTGCCAGTGGTGTGAGGAGAGGGTGTTCCTGAAAGCTGGCAGCATGGTTGAGGAAAACCTGTACAGGCAGCTACCCTGTAACTGCCATGAAAGCATGCCGGGCAAAACAGCGGTCGAACTGGGGCCACTCTGGGCGGGTCCTCTTTTCAACACCGGCTTTCTGAGAAGGATGCTATTTGAAGCAGTTCAGCACGGGATGGATGACATCCAGGCTCTTGTGAAGACACTGCTCTGCGAGTCGGAGTGCACGACGCTCAAACAATTCTCCATCACCAGCCCACTGAAACACATCAACCAAGAGGAATGCGGGGTGTTCATTCAAATCTCGCAGAGACCAGAAGACACGGCCACGGCTGAACAGTCAGCGATGCAAGgaaagaggaaaacaaatgaagaaacGGGGAATATGCTGAAGAGGCAGAAATCGGAGCCCCCTATGGAACATCCTCCATTCTACTACAGCATCCATCGCCACAGTATCCGGGGAATGAACATGCCAAAGTTGAATAAATTCCTGCAGTACCTCACGGAAGCCGGGTTCAGAGTGAGCCGGACTCATTTTGACCCGACGGGAGTCCGCACAGACGCCACCCTGGCCCAGTTTAAGTCGGTCCTCACCCAGTACAGCGTGCCCACCTACACTGCGGGCCAAACCGGAGGCCACAGCGTCGGCACTGATGAGGGAAACTGGAAGGTTGAGTGACTGGTCACCTTGAGTTCTCCctgcactgaaacaaaatgtgacTTCATCGCTAGGCAAGTGTCACTGGAGTTTATTTTCTTAGCATGGTTTCCAGGTAATCTGTAAACAAATGATCACAAccacatgaaataaaatcaacatcTAACCAGGCCCTGCTTTGCTGTGCTCATGGATAAGCCTATCGCCTTCCTTCTGGTTGTAATGTGAGGAGagtattattgtgtattttgtcaGCAGTGTTGACCTGGTGCAACCTTGCTCACCCTTTATGCTTCTTTGAAATCAGCTTTAGGATATTTTCAGGAACAGGTTTTGTTGCAAGAGCATGCAAGACTAATGATCCAGAGAACTGAAAAATACAGATAATTGATCAAACCTTTCTATCAAAAGGAAAGAATCATCACAGCTCTCTGGCACCTCTGCATTTAAGATCCGTTTACTGCAAAGATGAGCTTAACCGATAGTTGATTTGTGTCAGACTTTCCTTTCGAACTTTAAAggcaattaaataatcaaaaggatgtctgaatttgtttttatcccCTCAGTGTCATTCTTTGTGTtcagtatgtattgtttattcttttttcttaaaatgtgttaacTAGAAGTAAGTGTAAAGGGTTTATTAAAAGCTTT

Function

GO: NA

KEGG:

id description
ko03040 Spliceosome
ko03018 RNA degradation

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 350834 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 601428 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 622404 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 643941 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 742794 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 256144 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 292949 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 333529 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 441244 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 443620 15255889 ~ 15257664 (-) True G145436
AMCG00005081 mRNA downstream 21075 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005076 mRNA downstream 63987 14735839 ~ 14741930 (-) True AMCG00005076
AMCG00005074 mRNA downstream 100065 14701348 ~ 14705852 (-) True AMCG00005074
AMCG00005075 mRNA downstream 114964 14677660 ~ 14690953 (-) True AMCG00005075
AMCG00005072 mRNA downstream 171937 14625244 ~ 14633980 (-) True AMCG00005072
AMCG00005082 mRNA upstream 27125 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005077 mRNA upstream 152145 14964414 ~ 14969242 (-) True AMCG00005077
AMCG00005099 mRNA upstream 162982 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005098 mRNA upstream 230763 15043032 ~ 15056977 (-) True AMCG00005098
AMCG00005100 mRNA upstream 262403 15074672 ~ 15080833 (-) True AMCG00005100
TU182413 other downstream 1469171 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2649539 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2649539 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 5899323 8872885 ~ 8906594 (-) True G144115
TU181227 other downstream 5964929 8836360 ~ 8840988 (-) False AMCG00004894
TU182803 other upstream 152310 14964579 ~ 14967623 (-) False AMCG00005077
TU183873 other upstream 4202278 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4757790 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4945963 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 5208441 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile