RNA id: AMCG00005089


Basic Information

Item Value
RNA id AMCG00005089
length 2547
RNA type mRNA
GC content 0.50
exon number 23
gene id AMCG00005089
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15093955 ~ 15101859 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCTCAGGCCACTCTGCTGGAGAAGGTCACCGAGTGGAGAGTGTTAAAAATtctcacagaaatgtttttaccTCACCTAAACCTTGCTGATTTAGAGGAAGAGTGTTTCTCAAAGGTATTACCAAAGGTTGACAAGGTGTTCAGTGACCTGATGGAAGAGATTGCCAGTCAAATAGGTGGACTGACAAGTCAAAATACAGAGCTGCGTGCATTGCTGAGAAATGCTTTACAGATGATGGTCCAGGTATTGGAGACCCTGTCTGGGTGTGTGCGTCATGTCTGCTCTTTTGAAGAGTCCCTTGCCCTGGACACCATTCGATCTTTACCCTCCTGCATCCTTAAGGTCTTGAAGAACACATTTCAGTACTGCAAGGAGAGCGAGACTGTGTATAATGGGCGGTTATCGCTGGTAGTTGACCTGCTCCAGGCCCTGTTTAAAGAAGCCTACTCACTTCAGAAGGGACTCATGGAGCTTTTGGATAGAATATCCCTGGACAGTTCAGCGACCGAGGAAGACGCGTGTGATATGGTGATAGTGATTCACAGTCTCCTGGATATATGCTCCATAATATCTAACTTGGACATTACTTTGCATGCGAACACATGGAAGTTCATCATCAAACAAAGTATCAAGTACCAGGGGCTGCTGGAGGAACGACTGCGGCACAGTGACATTGTCTGCAGGTTGTGTGACGACCTCCTCGCCTCTTTTCATTCCTGCATGGAGCTTGCAGAGCAGATGAAGCAGTCTGGAGCCCCGgaATCTTCGCAGAGCGTAGAACGCAAATTCTTCCAGAAAACGGCAAAGATGTGTCGTTTTTTTGCAAACACGTTAGTGCACTATATAAAGGAATTCAAACCTTATCTGTCCAAATCTTGCGGTCGACTCCACCATCTGTATCTTCAGATGTACAGcaaGTTTCCCCCCAGCGTTTATGCTCCTGTGATTTCTGATGCACATTGCAATGAGATAAACAAGTTCGGTCCCGAGCTCGTTTTCCCTCAATGTCTCCTGCTTGTCAACATCATGGACAAGCTTCCTTCCCTGCCAGAGGAGGTTCTTAATCTCTGGTTTCAGGGAAGCCAGTTTCACGAGGAGACACCGAGGCTGCCGGTGTTTCAGGCCCTATTCCTGAGTTTCCAGCAGTGCTCCACGGAGCGTGCTGTGCCCATTCTCGTGCCCGGAGTGATGATGAATGGACAGGCACAGAGCCAAGTCACTCTGCACCAGCACGCCTGTGTTCACCTTTCAGCCTGTATCGCTTCTCTTCCGCCTGCCTATTTCCCACAGCTGGAGCACACCCTGCTGACGGCTCTGCTCTGTCCTGATGCTCAGACGGCTCTACTTGCTGCAGATGCCTGGTGCTTTCTAGTTCGCTATGGGACAGCAGAACTCTGTCAGCATCACGTGACCCTCGTATCTCACCTGATCAAGTCTTGCCCTGGAGACTGTTACCAGCTATCCCAGTTGACCTTCTTACTGAGACGAATGTTTGTAATGATGACACCAAATCATCAGATTGAGTTTGTGGAGAAGTTCTCCTCCCGGGAGCCTCAGAATTTGTGCATTTGGCAACATGTTCCTCTGAGAGAGTTTGCCCTGGATGTCAGGAAGCGAGTTGAAGACGACATCGTGAAGTCGGCTATTCCTGTGTGCACCAGCTGGTTAGATGGAGGGTGCAAGCTGGGCCAGCTGGAGAAAGTGAATACGGCCCTCTCTGCCGTGCTGAGCGTGTTTCGCGACTCCGGAGACGCCGTGGAGGAAGCACAGCTGCAGGCCGTCTCCAGACTGCTGGCACAGCTTTGGATGCGTATGTCAGTCAGCCAGGTGCTGTCGCAGCCCGCTGTTCAGTGTACTCTTCGACTGCTCCTCTTGCTTTCAGTCATCTTAGTACAGAGTATGGAGCCTCAAGTGCTTCCTCAGGCCCTGACATGTTTAAGCTCCCTTCTGCCTCTGAAATGTCCTGATGACATTGTGTTGGCTGCACTGGACTTCTTGGCATCTTTGGGGGAAATATTTCTACCTCCAGAAATACAGAGCCAGGTTCTGCCGAAGCTTGCCAGCCTCTTCTCGGCTCTGCTGACTGACGGGTCCTGGCTTCTCCAGCACCACACACTGGAGGCTTTTGCACACTTTGTGGAGGCAACTAACCATGAAGAAGTGATCCCCCAGTGTTTACCAtcagaagaaattaaaactaaagttGTGAATTTTCTCAGCAAGAATGTTCCTCTAGAGGAAAATCGGGAAGCTCGGCTTGAGAGATTAAAATTGCAAAGCTCTGTTATTGAACGACCCAGAGACAGACTGGAAAGTGGTGCCGTGGAAGCAGCTGGTGATTTGCAGCCCTGTCCAAAGCGTGCCCGACAGCAGACCAGTGAGGAGGAACAGTACGAGACGTCTCTGCAAGCGGCAGAAAGTGCTCTGAAGACGCTACAGACCTTAATGGCTCAAACTCCACCTCCACAATGGGTAGCGGCCAGGCTACGGGAGCTGGAGACACAGATAACTCGTATCAATGCGGTTCAACGGACGGGAGCGTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182835 lncRNA downstream 24842 15068413 ~ 15069113 (-) True G145358
TU182594 lncRNA downstream 638872 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 889466 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 910442 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 931979 14157580 ~ 14161976 (-) True G145138
TU182876 lncRNA upstream 3359 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 43939 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 151654 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 154030 15255889 ~ 15257664 (-) True G145436
TU182938 lncRNA upstream 159488 15261347 ~ 15266948 (-) True G145441
AMCG00005100 mRNA downstream 13122 15074672 ~ 15080833 (-) True AMCG00005100
AMCG00005098 mRNA downstream 36978 15043032 ~ 15056977 (-) True AMCG00005098
AMCG00005099 mRNA downstream 97749 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005077 mRNA downstream 124713 14964414 ~ 14969242 (-) True AMCG00005077
AMCG00005082 mRNA downstream 241140 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005087 mRNA upstream 15898 15117757 ~ 15119251 (-) True AMCG00005087
AMCG00005088 mRNA upstream 52569 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005093 mRNA upstream 63587 15165446 ~ 15182844 (-) True AMCG00005093
AMCG00005092 mRNA upstream 140702 15242561 ~ 15249295 (-) True AMCG00005092
AMCG00005108 mRNA upstream 183844 15285703 ~ 15304821 (-) True AMCG00005108
TU182803 other downstream 126332 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 1757209 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2937577 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2937577 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6187361 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3912688 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4468200 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4656373 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4918851 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4918851 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile