RNA id: AMCG00005098


Basic Information

Item Value
RNA id AMCG00005098
length 3652
RNA type mRNA
GC content 0.38
exon number 13
gene id AMCG00005098
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15043032 ~ 15056977 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATTGCAACTCAATGGGGCTCAGCAGCGGTGCGGGTTGACTGTTTCTTTTTAGGTTTTGCGAGTTACAGGTCTTGTATACAACAATCAGTGAAAATGGGAAGAAGTTACATTGTGGAAGACAATGTAGAAAAGTACATCCTAAACCTGAACACCATGGAGAGATCCTATATAACTGGACTTTTAATTGGACAGTGTTCCTCCCAGAGAGATTTTGTGGTGTGGGCCGTTCAGTCACCCGAAAAGGAAGCACAATCCCCACAGCCCCTCAGGAAGAGTGCTCTGGGGCCATTTGAGGACATTGATGAAGAGTGGGTTAATGAACATGCCCGCCAGGTGTCCAGAATGTTACCCGGCGGACTGGCAGTTTTGGGGGTGTTCCTAATCACCCCGCCTGAACAGTCCAAAGAAGCTCAGACTATGCTGCGCAGGTTGGTGTTTGCAGTGGAGAAGTCCATAATGAGGGGAAAGTTGTGGACACTCACGGATGACGATGTCTCCGAAAGAGTGACCCTTCACATCTGCTCAAAGACAAAGAAAGTGTTGTGTCGGACCTTTGATATGCGAGATCCTAAGAGCTCTGCTAAACCAGCAGATTGGAAGTACCAGTCCGGAGTGTCGAGCTCGTGGTCGGTCCTACAGTGCAATGTTGAGATCAACCTGCAGGTCCCGTTGTCAGAAACATCCTCTGACAAAGACCTTGACAAATGCATTAAGACTGAGCTTCAGAAGTGGGCAAACCTCATTGAAGGCAGCGTTTGTCTGATCAATGGCCAAGTCAGATCTGATGATAAGGATTTCATGGACGGACAGaggAAGAACACAAGAGGTTCTGGTTCACAGCAGACTTTCATGGTCCAGCTTTTAACGCCATCACAAGGTCACTTTTCCGTTGAGAGGACCACTGCTTCAGTACAATTCTGCAGTGCCTCGATTTCATTGCAGGGGGTTGCTTTGAAGAGAGATGTACTGAACACAGTTTCTGTCCGCACAGAGATGCTATTTGAAGATTTTCTGCTGAGTGAAGGAGATGATATGAATTCAGCGGCTGGTAAGGGGCAGCATATGTTGCCCCGGAGAGTGTTTGCCCCAGTGCTGGGCTGTGCGCTTGGGGTGTGTGACTACATGTTCCCAGATGAGGCAGTGGCAGACCTGCAGGAACGCTTCAGAGAAATGTTGGACTGCGACATCAACGAAGAGCACATTGATATGACCCAGGAAGTGTTTGGAGGTGTGGTGATGGCCGCTGGAGTTGCCATCGTTGCTACAGCTCTTTCTCTTCTCTATTTTAGCGATTGAGCTCTCTAATAAATCTTGTAGACATCTGAGAGACATTCAAGCCTGGTGAAGACGAGCACGGTCTGAAAGCCTGAGAAcactgtgttgctgttgtttgggttttttcaAGAGGGATGGTGAAATGTCGGATCaaatttcatttcactttttttttttgtctaaaaTATCATGTTATGTCTCCAGTGACAGTTTGATAACCAGATCTGTCTGAATGGATGACAAAGGATGAATGCTTCCTTTTCTAATTATGTTGTGAGGATTATGATGCTTCAAAGCCCACAGCCCTGTACTTGTCCAAGGTGTGGTTTCATATGACTCTTGGAAAATAGTTTTTGTCTGCTTCCTCCAAACTGACCTATTATAAGTGCCCAATGTAGCTTGCTATGACTCAGCATTGCAGATAGGCTAAGCCAATATCTGAACTGAATGTTAAACCAAAAGACCATAAACTTAACACATTTACAGTTGAGCCATCTAAGATCCATACAACTGTTATGTCTGTaaattaattatgatttaatagACTGAAAGAAATATGTATAAGAGCTTTCTATCCATAAATGAAATAGAACCTCATTCAATGCTATTTGAAATGATTCCACACGACACGGCCACAAAATCCCCCAAGCAACGCTATTCCTGGAGATCTCTGTCAGAACAAGCTCAAAAGCAGGCCAAGCAAAGCACGTTGCACGAAACTGATGTGGCCCTTAAGATACTGCGAAATTATTAGGAAATCCATCAAAGATAATTTGATAGTACAGTAAATGGtgtgattttattaaattaagatttcCTTGAAAAAAGTATGTTCATGTCAATGTTGAGTCACTTCTCTGGCCAACATTTTAGATACTTTTATCCCATTACTTCTgagagtaaaaaaacaaataaaagatgtGTGTTATAGTTCGTTATTAATCTATGGAATACATGATCTCaattaacacatatatatttttaatttggccTTATTGTttgaacatatatattattgtttttctacaCAAGGCTTGAAatgatttcacattttgtaaatgtgttctctaaatcaaagtttaaaaaaggCTCTGCAGCTGGGTGATctgttatgaatacatttgcgTTTCCAGTGAGTTACTTTTCATCCTGCTAAAACTGCTCCATCTTGAATACTGGTTGTTCTTTACTTTAGATGTGTAAAAATATGCCATTTCAGTTTCACATGTGattctgtgtttcttttgctttttcagGTGTTTCCATTATATGTTATGATGTTATAACTTTATTAAAAGTTAAGAATGTAATCACCTTTCAATCCACAGAGGTTCAGAGTAGTTTCACTATAGATAAAGATAATTAACAGACTGAAGATAATTTCTTTCaggcaaaacattttcatttagcaACTGCAAATTATACTATGCTTTTAAGGTTATAACACGCTATGCTGGAAAGATTTGGGGTAATTATATATTCTCAGATTCACCCAAATGACTTATGgtattactgtacattttaacaagaattgtatttatttttaacaaatgctGCTTCATTCTGCATTTGTAGAAATGCATTGAGCTAAATATGTATTGAGATTTCTACTGTTGTTAGGTTTCATcccatgtatttttgtttttatttgcatacagTGTATAAAGCTATTCAAAATATCGAATTCTAACATGATCTATGACCTATGCTGTTTAGGAGCTTGTTGGAATTTGTCATTTGTTGGTAATACCTTATCTGTTGAAAAGATGAGATGTGGAAATTAACTCAAAGattagatgatgatgataacatTTCAGATCTGACAAGAATTTGGTTAAAAAACACTGTGGCAACAATTATGAAAACACTTCAGTAATGGTAGTTCACAATGTATCTTAATTAATGTACCTCACTTGTGGTTTTTCCCTTCCCAACACATCCAATTTAACTTCCCAGGTAAGGGTTTTCTTCAAAGCTTTTCGTGTGACTTGGAGAGATACTTAAGTATTGCCTTATAGCTGTTGCTAGCAAAACATTTGCCACTGCAATTGCTGACACCTAGTTACTTTTGTAATGGTGACTGGCCTGGAATACCTTGCAGGGACTGTTATCTCTAGATTTTAAATATGAGGAATCCTGCAAACGTCATGTGATAATAagtttgctttaattaaataactttttgtccccttacaagttttttttttttctctcagatattttctgttaaaatggtttaatgccaagacatttttaaatcaatttatctTTGCTTGACAGTTGCAGTATTAAGGGTTGTCAAGGTAAAGTTTTTTGgtaataaagacaaataaacattaattctAAAACTATGCAAAagatatttctttttttatta

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182594 lncRNA downstream 587949 14426966 ~ 14455083 (-) True G145173
TU182564 lncRNA downstream 838543 14204259 ~ 14204489 (-) True G145148
TU182562 lncRNA downstream 859519 14180104 ~ 14183513 (-) True G145146
TU182553 lncRNA downstream 881056 14157580 ~ 14161976 (-) True G145138
TU182541 lncRNA downstream 979909 14062865 ~ 14063123 (-) True G145131
TU182835 lncRNA upstream 11436 15068413 ~ 15069113 (-) True G145358
TU182876 lncRNA upstream 48241 15105218 ~ 15105450 (-) True G145387
TU182894 lncRNA upstream 88821 15145798 ~ 15149592 (-) True G145401
TU182930 lncRNA upstream 196536 15253513 ~ 15254888 (-) True G145434
TU182932 lncRNA upstream 198912 15255889 ~ 15257664 (-) True G145436
AMCG00005099 mRNA downstream 46826 14975251 ~ 14996206 (-) True AMCG00005099
AMCG00005077 mRNA downstream 73790 14964414 ~ 14969242 (-) True AMCG00005077
AMCG00005082 mRNA downstream 190217 14839394 ~ 14852815 (-) True AMCG00005082
AMCG00005083 mRNA downstream 230763 14805917 ~ 14812269 (-) True AMCG00005083
AMCG00005081 mRNA downstream 258190 14771562 ~ 14784842 (-) True AMCG00005081
AMCG00005100 mRNA upstream 17695 15074672 ~ 15080833 (-) True AMCG00005100
AMCG00005089 mRNA upstream 36978 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005087 mRNA upstream 60780 15117757 ~ 15119251 (-) True AMCG00005087
AMCG00005088 mRNA upstream 97451 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005093 mRNA upstream 108469 15165446 ~ 15182844 (-) True AMCG00005093
TU182803 other downstream 75409 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 1706286 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 2886654 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 2886654 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6136438 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3957570 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4513082 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4701255 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4963733 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4963733 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile