RNA id: AMCG00005106


Basic Information

Item Value
RNA id AMCG00005106
length 2400
RNA type mRNA
GC content 0.44
exon number 3
gene id AMCG00005106
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15348635 ~ 15351466 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

agaGGCACGACTGGGGTGAGAAGGATTGCTGGAAATGAACACAGTGCAAGCTGCAGCAACACTCGAAATCTGAAACGAAACGAACCAAAATACTTCCCTGAAGCAGTAACCATGGAGACAAGCCAGCTACCAGAATCGGCCTCTGTAGTTGACTGTAAAATGGATTCTGTGGAAACAGAAATGGCTGAGGATAAATGCGTGGATGTGGAAGCCGAACAAGTTCATTTCCATGCTGATTTCTCCGAGTCCATAGAAACAAAGGAAACAGTCGATATTTGTGCTGACCTGCCACAAACTCCCATCCCATTGGATGAAAACGAGAGCTTCGAGGGAAATGGAAGTTTAACAGAAATCACGTGCAAAGGAGACGATTTGATCTTACGCTCGGGATCAGTGGAGCTTAATCGGACAGAGTCGGTGACCTCTTCGATATCCGACTCACCTTCCAGTGCAGGAAGTGTctatgaaaatgaattgatcGTCAAAAGAAAAGAATTGGAGGTCCAGATTGAACTGGACAATGCTGTTACCACAGATGAGTCTGCAATAAGTCCTGTTACAGAAATAATCGACCACGAGGTACAAGACAGTGTTCTGGAAAGCGGTGTACTCGAAGAGCCTGAGACCTCTGTCTTAGAGCAGTGTATAAAAGAGGAAACCGCGTCTGATGCTTCAACAGAATCCTGTCATGAACTTGACAACAATGAACTGATTGACAGCCTTCAGGATGAAATAGCGGCCATTTCCTCAGACAGTGAAATTGATGAGAAATGGAGAGccatattttcttcttctgttaaTAAGGAAGGTGAAGATCTTTTTCTGGACACCAATACTGAGACTGACACTCAACCATTTGCTGCAGAAGATGACAGAGATGTCCTCAGCCCAGATGAAATTAATCCAGAGATCGAGGGAGAAGTCTCTGACATTTTAGATGTTAAGGAACAACCTGAAGAACTCACAGAACATGATTTTCAAGCACAGGAGTATTCATACACTTCTCCTCCTCTGCTTCACGGCTTATCCAAAATATCTGAAGATGACGAAGAAGTTATTCAGAGtgtaaaacaaaccacacaccTATCACATTCTGTTCTGGCAGATCCCACGAAGAAGATTCCAGAGGActattgtgtcattcaagagacaaaaaatgaaaatgtcagttCAGAGCACGTAGATTTCAGAGTTGCCCGGAAACAGTGGTTGTTGATGGAAAAGCAGACCAAATGCCAAGGCTGCCAACCTACAGTGAAGCCAAACGCATGCCAGGGTGGCCACAGCTTCATGTATACTCCAGTCAGAAATATCGACAGGCCTAAAAAAGATCCTGAGGCCGACAGTTTAGGAATAAATGAATATCCGAATACTCTATTCAGTCCTTGCTCTGAAGACTCTGGTTTGGATGACTCAAGCTATAGATCTCCTTATGATGACCCCAGTATAACATGTGATTTCAAAGACCTGGCTGACACTCCGTACAGCCCCAGACTCATTTCTCCAATGTCTCCAGAGACTCCCATCGAAAAGGAAATCCGCTTGGCtttggagagagaagagagtcTTCGCCGTGAAAGGGGGATTGCAAAATCAGTCCATGAAAGCGAAAGTGTTGAAACCAAAATTAAATCTGCTAATATTCTGCCGGGGAAGTTTGAGAGAGGATTGTGCCAggaagtgggggaaaaaagaaagatgtttgAATCTCAAGAAGATGTGTGCAGCGTACAGAGGTCCTCCAACACCAAGCCACCATCTTTTACTATAACCTCAACCTCCTCCCCAGTCAAAGGTCCTTTATATCATGAGATGGCAGCGAATAATGTAATTATCCTCGAACCCGACACATATTTCTCTGCTCCGAGACAATGTGCAAAAGATGCCATCCTTTCTCCTGTCAATAAGAAATCAAATGAGTGGCCCTCCGAAACCACCAATGTTATCATACTAGAGACCTCCAACCTGATCATACGGAGCGCGTCCGAGTTTTGTCTGAACTCTGCCTCCGAGCAAGCTCAAGAGAACTCCTTCCAGAATAATCCATTCTTCAAACTGCGTTCCAGGAGCACCCAATCTCTTGTAGACCAGGAAATTAAAGTAGCAaaacagagagaagaagaaCTACAGAGGCAAAGGGCAAGTCTGTATGCCAAGGAGAAGTATGATACTGTCTTGGTATCTCCAAATCTACTTGACAGTTTGACCTTTGACAAATCAGATTTACCAGTGAGATGTAAGTCCTCTCCTTCATCACCAATGAAGACTGCATACAAAATGGACCGCTCAACACTTTCTTGTGAGCATAAGtttccAGACTCTTTCAGTGGAGCCCGTCGTAAAAGTGCCATGGCTCTTCGCTGGGAGGCAGGGATGTTTGCCAATCATAAAGAAGAATGA

Function

GO: NA

KEGG:

id description
ko04727 GABAergic synapse

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182938 lncRNA downstream 81687 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 90971 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 93747 15253513 ~ 15254888 (-) True G145434
TU182894 lncRNA downstream 199043 15145798 ~ 15149592 (-) True G145401
TU182876 lncRNA downstream 243185 15105218 ~ 15105450 (-) True G145387
TU183041 lncRNA upstream 151805 15503271 ~ 15520163 (-) False AMCG00005111
TU183044 lncRNA upstream 151805 15503271 ~ 15535145 (-) False AMCG00005111
TU183125 lncRNA upstream 607385 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 1023196 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1612737 16964203 ~ 16965074 (-) True G145760
AMCG00005109 mRNA downstream 15115 15311593 ~ 15333520 (-) True AMCG00005109
AMCG00005108 mRNA downstream 43814 15285703 ~ 15304821 (-) True AMCG00005108
AMCG00005092 mRNA downstream 99340 15242561 ~ 15249295 (-) True AMCG00005092
AMCG00005093 mRNA downstream 165791 15165446 ~ 15182844 (-) True AMCG00005093
AMCG00005088 mRNA downstream 186450 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005107 mRNA upstream 8507 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005101 mRNA upstream 67109 15418575 ~ 15436970 (-) True AMCG00005101
AMCG00005111 mRNA upstream 151616 15503082 ~ 15517652 (-) True AMCG00005111
AMCG00005112 mRNA upstream 441148 15792614 ~ 15814059 (-) True AMCG00005112
AMCG00005115 mRNA upstream 596062 15947528 ~ 15952291 (-) True AMCG00005115
TU182803 other downstream 381012 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2011889 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3192257 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3192257 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6442041 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3663081 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4218593 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4406766 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4669244 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4669244 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile