RNA id: AMCG00005108


Basic Information

Item Value
RNA id AMCG00005108
length 2315
RNA type mRNA
GC content 0.40
exon number 15
gene id AMCG00005108
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15285703 ~ 15304821 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGGAATTCAATCCAATTTTTTAGCGCAGTGCTAGACAGTATACAATATGAGTTTAGTAGCTGCTGTTCAGTTAAGACCAATccaataataatagtgaaaacAGCAAGattaatttagaataaaatCACAGTTGTggaaaatatgatttgtttttgacgGAGATGACCAAGGTTCCTGGCTCCTGCAAAATAGTGATTGCACAAGTCGATTGTCAGAATGAATAATGATAAAGTCAGCTGAGTGTAGAGATCATAATATCGATATCCTCATTTATATAGGAGAAGACAGTGCTTTAAAAACGTCATCGACTTCTTACGGGCTGAGTCTCTGCTATATGATCATCAACACCAGGGCTGAACAACAGGGTTCATTCACCGGACTGGACAGCAAGCGGAGCACTTTTGTGTTGGGAGCATCCTTGTGGTTTGCTTGTGCAAGATGGATAGTTGGAGATTTGTCTTCTTGTTTCTTCTCTGGGAAAGTTCCCTACTGGGTGTCATGGGTTACCCAGGGGGAAATGTTGAAAGTTCCTGCAGTAATCTGATGCCTAGCCATGGTGCTAATGCCCAGACTTCAAATGCTCCCTACACTGTAGTGGCAAATCCGACAACCTTCAAGGCAGGAGATACAATCACAGTGACTCTCCGAGCTACGTCTGGTTCATTCAAAGGATTCTTGTTAGAGGCTTGGGAAGTTGGAGGAAGCACACCTGTCGGTAGTTTCACTAGTCTAGCCTCGGTTTCTCAGGGTCTGACCTGCAGTGGGATCGCAAATTCGGCTGTTAGTCACACTTCCAGCTCTAGTAAAACGTCGATCCAAGCAACGTGGAAGGCACCATCATCTGGAAGTTTGAAAGACATTCAGTTCAGtgcaaCATTTGTTCAAAGCACTAAAACATTCTGGGTTGCTGTTAAAAGTGGAACAGTTACATACAGCGGTACCTCTGTCCCTAATCCTtTACAGATTTCTAATGATGCTTGCGGGATCAATAAAACCTGTTTCAGCAGTCCCAGTGGTTGTAATCCACAAATCACCAATGGCTGCTACTTCATGTCTGCTGTCGCCTTGTCTTCCTCAATTCAGTTTGAAATTTCTGCTCCCTCAAATGGCTACATAGCAATTGGATTTTCAGATGATACACAGATGGGAAGTGATGATGTCTATATCTGTGGTAAGGATGCAAATGGCAACATTCAAGTTCAACATGCCTTTTCTACAGGAACGACAACGCCAACTACATTACCTCTGGGAAATGTTACTGTGATAACGTCTTCTATCAGCAATGGTATCATCAGTTGCTCGTTCATATCAAGAAACAGCATTTCAACACAGAGTCGTGCTGTGCCAAGTCTTCTGTATTACATCATGTTAGGCTCTGGACCTTCTGCTAATGGTCAGATACAAATGCATACTCAAACCCCTTTTGTCAGTGCCCAGAAAATTGATTTGTCAGCCATCCAAGCAGTAGGTGGGAATGCAGGAGTGTCGGATATGATTAAAGCCCACGGAGCACTAATGCTAATAGCCTGGATGACCACAGGAAGTATTGGCATGATCATGGCCAGGTATTTTAAGAAAATTGCACATGGGCAAGCAGTCTGTGGAAAAGATATCTGGTTTCTGGCTCATGTATTTCTGATGGTATTGACGGTTGTCGCAACTGGCATTGCATTTATCATCATTTTTGTAGAGGCAATGGACTGGAGTGtggcTGCAATATTCACTGGTCTACAGCGCATTGACAGCTCCTCAAATCAGTGGCTGGCAAAAGTAATGGGAGGTTTTGTTGGATGGGAATTCCTGTTTTACTTGCTAcaggattttaatttgtttttgaagagaaAAGgacgAACAGAAACGGTCATGGGCACGGTGAATTTGGAGATCATATTTCTGACTCTGTATTTCATCGGGAACTTAACATTTTTGATTGCTCTACTTGTTGGAATTGGTATGTCATGAAGAATCAAGCACCGGAAATACCAGTTTTGTACCATGAAGTGTCAATTTTTCTCACTTAAACCAATGAATAATTAAGCAATATATGAAATAACATATAAAGTTCCTataataagaatatatttagaatacttacatttgtattatgatttcTGGGAAATAACCTGGGAGGAATCTGATCAGTAAGTTGCACTACTACTAAGTTTTCCTGTCCTCCatactgttttttaaaaaaaaatgtgattaatcaATCTCATTTAGAGATTGCTTATCCGAATTGCATCATCCATAGATGTCAGTGAAAGAATGCATATTTCTTGAGATACatagatttgtatatatatatatatatata

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182938 lncRNA downstream 18755 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 28039 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 30815 15253513 ~ 15254888 (-) True G145434
TU182894 lncRNA downstream 136111 15145798 ~ 15149592 (-) True G145401
TU182876 lncRNA downstream 180253 15105218 ~ 15105450 (-) True G145387
TU183041 lncRNA upstream 198450 15503271 ~ 15520163 (-) False AMCG00005111
TU183044 lncRNA upstream 198450 15503271 ~ 15535145 (-) False AMCG00005111
TU183125 lncRNA upstream 654030 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 1069841 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1659382 16964203 ~ 16965074 (-) True G145760
AMCG00005092 mRNA downstream 36408 15242561 ~ 15249295 (-) True AMCG00005092
AMCG00005093 mRNA downstream 102859 15165446 ~ 15182844 (-) True AMCG00005093
AMCG00005088 mRNA downstream 123518 15154428 ~ 15162185 (-) True AMCG00005088
AMCG00005087 mRNA downstream 166452 15117757 ~ 15119251 (-) True AMCG00005087
AMCG00005089 mRNA downstream 183844 15093955 ~ 15101859 (-) True AMCG00005089
AMCG00005109 mRNA upstream 6772 15311593 ~ 15333520 (-) True AMCG00005109
AMCG00005106 mRNA upstream 43814 15348635 ~ 15351466 (-) True AMCG00005106
AMCG00005107 mRNA upstream 55152 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005101 mRNA upstream 113754 15418575 ~ 15436970 (-) True AMCG00005101
AMCG00005111 mRNA upstream 198261 15503082 ~ 15517652 (-) True AMCG00005111
TU182803 other downstream 318080 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 1948957 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3129325 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3129325 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6379109 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3709726 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4265238 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4453411 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4715889 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4715889 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile