RNA id: TU183044


Basic Information

Item Value
RNA id TU183044
length 965
lncRNA type sense_over
GC content 0.35
exon number 2
gene id AMCG00005111
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 15503082 ~ 15535145 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aactttttttttttttttttttttTTTTTGTAATGACTTCCCAAGTGTGTGATGACCTGTGTTTGAAAAACTGATGTTATAAAATgacctgtaaaatatataagGGTGGCATTAAAGGGAATATTTAATGTGTTCCCCTAAGAATGTATCATGAACATCTTTCAGTTCACACTAAATTAGATGAAAACAGATCAATCGCATTAGAATATATTATTTGCCTAAAGACTCTGCTGCTTTCAAGGACTTCTCTATCAAAACATCCACCACTTGTTATGCATCTCATTACTTGCTGCTCGCCCCCAGCAGAGTATACAGTGTAACCACAATGAGAGAGTGGAAACCAATGCATCATTCGGGGGGTTGACGAATGGCATTAATTGTCCAGGAGAATGACTAAAACGTCCCAACGtaaaattatgaataacatagttcagcattttattataaatgtttttgaatatgaAACACCCAGAATATAGATGTTTTTCATGGTTGTACTAATAACCATATAATCAACCTATTACAGCCACATACTGCAGGAATGTGTATTCACATGTCATGCATTTTCCATTGTGGTGGAAACTCATGTATTCCTTCCCATTTGGCCCTTTCTGCAATGGCCATGTGTGCATATTCATCATCAGTGGAAGTAGAGCATGCCAGATTCCCAAAATAGGTTACTGACGTGACTTaatcacattaaatattgaactgCTTGCTTTAAACTACTTGGAGGCCTTCAATTgttgtatttgccagtatttCTAATTAGTGTTATATCTTTGCTTAGATGTGCCTCCTGTcgattataaaatgttaattcccGTGTCCCTAGAAGGTGACAGCATTCTGTAATAACATTCATTGGTTTATTATTGGAATTCGACACACTAAGGTATCAACAGCGATCTTTATAAATGGTTCATTATGGgctatatcaataaataaaatgtttgtttacaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU182938 lncRNA downstream 236323 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 245607 15255889 ~ 15257664 (-) True G145436
TU182930 lncRNA downstream 248383 15253513 ~ 15254888 (-) True G145434
TU182894 lncRNA downstream 353679 15145798 ~ 15149592 (-) True G145401
TU182876 lncRNA downstream 397821 15105218 ~ 15105450 (-) True G145387
TU183125 lncRNA upstream 423706 15958851 ~ 15978855 (-) True AMCG00005114
TU183239 lncRNA upstream 839517 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 1429058 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 2008018 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 2489620 18024765 ~ 18025674 (-) True G145995
AMCG00005101 mRNA downstream 66301 15418575 ~ 15436970 (-) True AMCG00005101
AMCG00005107 mRNA downstream 133283 15359973 ~ 15369988 (-) True AMCG00005107
AMCG00005106 mRNA downstream 151805 15348635 ~ 15351466 (-) True AMCG00005106
AMCG00005109 mRNA downstream 169751 15311593 ~ 15333520 (-) True AMCG00005109
AMCG00005108 mRNA downstream 198450 15285703 ~ 15304821 (-) True AMCG00005108
AMCG00005112 mRNA upstream 257469 15792614 ~ 15814059 (-) True AMCG00005112
AMCG00005115 mRNA upstream 412383 15947528 ~ 15952291 (-) True AMCG00005115
AMCG00005113 mRNA upstream 419319 15954464 ~ 15956072 (-) True AMCG00005113
AMCG00005114 mRNA upstream 423559 15958704 ~ 15975921 (-) False AMCG00005114
AMCG00005123 mRNA upstream 508056 16043201 ~ 16045747 (-) True AMCG00005123
TU182803 other downstream 535648 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2166525 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3346893 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3346893 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 6596677 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 3479402 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 4034914 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 4223087 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 4485565 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 4485565 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile