RNA id: AMCG00005123


Basic Information

Item Value
RNA id AMCG00005123
length 938
RNA type mRNA
GC content 0.48
exon number 6
gene id AMCG00005123
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16043201 ~ 16045747 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGCAGCTGCACCTTTCAAATGGCCAGGCAGAGAACCAAGGATCTCTTAATTTTGTTGCCTTTGGGGACTGGGGAGGGATGCCTGTGCCCCCCTATTTCACACCCTTGGAGAAATCCATGGCTGCAATGTTGGGCAAAGTGGCCCAGAGCAAGAATCTGGACTTCATTCTGAGCCTGGGGGATCACTTTTATTACAACGGTGTGACGGATGTTGATGATTTCCGCTTTAAGttgACCTATGAGAACGTGTTTGCCGAACCATCCCTGCTTCCTGTACCTTGGTATCTTGTGGCGGGAAACCATGATcatctgaaaaatgtatcagCTCAGATCGCTTATTCCCACAGGTCCCAGAGGTGGCATTTTCCTGATGTGTATTATGATTTACATTATAAGATTCCTCACAGCAATACCTCAGTCACTATTCTGATGATTGACACAGTTCTGCTCTGTGGAAACACCTACGAAGGAACACAACCTGAAAGACCTGAGAGCCCAGACGCTGctgcaaaacaattcaaatggATTCAGGAACAGCTGCAAAGTTGCAAGTCTGAGTTCCTCATCGTCGCTGGTCATTACCCTGTGTGGTCCATAGGGCACCATGGCCCAACGCATTGCTTGGTGGACCAACTGAGACCTCTACTGAAGAAACACAACGTCACTGTTTATCTCAGTGGGCATGACCACAGTTTACAGTTTATCCAGGAGGATGATGGAGCCGCATACGTCGTCAGTGGCTGTATGAATTTCTTCGATTTGTCAACGTATCACAAGAACACGTTTCCACAAGCCTGGCTGCGCTTCTCCAGTGCAGAAAACATCACTTTTGGGGGGTTTGCGAACTTTGAGGTCACTAAGGACAAGATGTTCATCAGTTACATCTCAGCGAGCGGGAAACAAGTGCATCAAACGGCTTTGCCAAAACGCAATGTT

Function

GO: NA

KEGG:

id description
K14379 ACP5; tartrate-resistant acid phosphatase type 5

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183125 lncRNA downstream 64346 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 508056 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 523038 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 776253 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 785537 15255889 ~ 15257664 (-) True G145436
TU183239 lncRNA upstream 328915 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 918456 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 1497416 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1979018 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 2252100 18297847 ~ 18298103 (-) True G146022
AMCG00005114 mRNA downstream 67280 15958704 ~ 15975921 (-) False AMCG00005114
AMCG00005113 mRNA downstream 87129 15954464 ~ 15956072 (-) True AMCG00005113
AMCG00005115 mRNA downstream 90910 15947528 ~ 15952291 (-) True AMCG00005115
AMCG00005112 mRNA downstream 229142 15792614 ~ 15814059 (-) True AMCG00005112
AMCG00005111 mRNA downstream 525549 15503082 ~ 15517652 (-) True AMCG00005111
AMCG00005124 mRNA upstream 732 16046479 ~ 16057475 (-) True AMCG00005124
AMCG00005133 mRNA upstream 92721 16138468 ~ 16166800 (-) True AMCG00005133
AMCG00005125 mRNA upstream 145422 16191169 ~ 16205201 (-) True AMCG00005125
AMCG00005128 mRNA upstream 183610 16229357 ~ 16302453 (-) True AMCG00005128
AMCG00005129 mRNA upstream 267014 16312761 ~ 16317301 (-) True AMCG00005129
TU182803 other downstream 1075578 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2706455 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3886823 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3886823 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7136607 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2968800 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 3524312 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 3712485 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3974963 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3974963 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile