RNA id: AMCG00005133


Basic Information

Item Value
RNA id AMCG00005133
length 2722
RNA type mRNA
GC content 0.40
exon number 14
gene id AMCG00005133
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16138468 ~ 16166800 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTTCCCACAGGACCTAAACGCATCAAGTTCAAAAAACGACCAGCATTGGGTCACGGGGTCACGAACCCGGAAGTTCGAGATGTTGGGTCTGGTTACTTCCGTCGCGGCTCCATCGTGGACAAAAACAGCGGCCAGTGGAGGGCTTCCCCTGTCCCCAGTGGAGACATGAATGAGAGTGTCAGATTTCTCAATCTCGGGTACTCGGAGCTCATCAGCTGAAAGGGGGCACTAATGCCGTGATTGTCAGAGAAGAAAAGGGGCTGCTGTTATTTTCTTAACCGAAAGGGAAATAGAAGCAGGAAAAAGCACTAAAAGAATGAGCAGAGTCACCTTCTTTGAGGTGGAGATACTTCATCCCAAGACAAGGGAGCAGCTATGCTTTCTAGACAAGGTGGAACCTAATGCTACTATAGGAGAAATCAAGTGTTTGTTTCATAAAGCCTATCCCCAGTGGTATCCATCAAGACAGGCCCTCAAGCTTGATCCTAGGGGAAAAGCACTCAAAGATGATGAGATATTACAGAATCTACCGGTCGGAACCACCGCTACAATGTACTTCAAAGACCTAGGACCTCAAGTAGGCTGGACAATGGTGTTTCTGGCTGAATATGCTGGTCCACTTATAATATATCTGCTTTTCTATTTCCGTCTTCCATATATCTATCGCCATAAGTTTGCCTTTACCTCCAGTCCTTACCCAGTAGTGAATCTGGCCTGCGTATGCCACTCATTCCATTACCTGAAGAGACTTGTTGAAACAATATTTGTGCATCGATTTTCCCATGGTACTATGCCACTGCGGACTATCATGAAGAACTGTTTGTACTACTGGGGATTTGCAGCATGGTTGGCGTACTATATCAATCATCCACTTTATACGCCACCTTCTTTTGGAAATACACAAGTAAACTATGCCCTGGCAATGTTTTTGCTGTGTGAGGCAGGCAATTTCTCCATTCACTTAGCGCTCAACAACTTAAGATGTGATGGTAGGTGCCTGGGTCGGTTTCACAATCATGACACAATGTGTTCCAGTGGCCCTGTTTACATTTGCGGGCTTCATTCAGATGACAATCTGGGCAAAAGGGAAGCACGACACCTACAACAGAGAATTTAAGGATTACCCAGAACTCAGGATGTCTATAATTCCCTTGTTACTCTGAGGAGACTGTGTGCTGGGAAGGTGGGGATGCAGCAATCAGCTGGTGTTGGGTTGAGTTAAGGCACTCGGTTGCAGTGCCCTTGAATGATCAGGTTTATTTAGACCCAACAACAATGCTAGATTGTGTTATTATTgggaaatgtgtaatttaagaTGAGCCGAGAAGGCAATAACTGCTTTCATGACGGCATGGTGCAAAACTTTAATTTACCTtatacagatttaaattaaatacttcagTATTTCAAAAATGAATGGTATTGAAACTGTATGTTGATGTGTGAGAGAACAAAGACTGTTTATGAGCGGTCAGCTAACCTAGTGTCAGGATATTGACTTTCATCATTCTACCCTCACCCAGTACTGCTTATCTATCAAGCAGTAAGAGAGTATGCACAGATTTAgtcaatatgtatatttgtgtgtgtctttcccAGTCTCTTTCTGTTTGGTTTATCATTCCTGAATCCTGGTTTGTGAAAGTCCTTTTGTGAGATTGACCATTTTATATCTGTTCTTTCTTTCATGAGTATTTTTAAAAGGACATATGATCTTCTATGCTTGTCTTGGAACACAGCTCTGACATAATTAAACACATGAgtcaaaagtacattttgttcatGTGCTGTGGAGACTAATATGCAGCTCTAGTGCCATTTTGTCAATATGCCAATAGGTGCAATGAAAGCAAGACTGCCTTTGATGAGCTGAATAGAGATTCAAACAGTGTGGGACAGTGAGATCTATTTTGAGTTTTGTGCGATTCAAAGGAAATAAGCACTTTTTTCTTCTGGAAGTTCCTTCAAGTAATACTGTAGTTGCTTCCTCACTTGAATTACTAGCTTTTAGTGGCAACATGCTTAACATTTGATCAAGAGTTTATAGATTGATCACCTCACAATAGTAAAATGATGCCACAGCCTTCAGCAGTCACATGCATAATGCTTTGtggactttttattttctttatttgtggaagcaaaatgaaaaactggATGGATTAAGTGTCTATACATGTTAGGAATGGTGACAAAGTTGTTATTGTTACTAGTTTTGTAAGCATTATTAGGAAAGGTGatggaattaaaatattacaggaATGTTAATAATGTCAGGATCTTTACTTATGCTGAGATGTTGGGGGGAAAAGGCTACATTAATGGAAAGTCAAATAAGACTAACGGAAGTGAAAAAATAAGGCTAAGAAGTGGTAGAAAGTTGGAGTAAATCGATCCCTAAAATGAGAAGAAAGGGGCAATGCATGTTAAAATGGAATGAGGAAGACTGGATAGTAAATTCAAtacagcaaaacacacaaatgtgtaattgtacATGCACTGATAAAACGATCATATAATGGTTCTGGATGAATCTGTTTGCATTGAGTTTCATCACTAAACAGGTTTTTATACCAGAAAAAGCCATAATGTCCTACTGGTGCTTAATTGTACCCCTAAGAGCTACTTTATTCTCAGGTGCTGTTTTCTGTAGTTCTGTGTTTAAGACTACTGTAGCCTTGCAATCCATGGTGcttttgctctgtttttttatccaaag

Function

GO:

id name namespace
GO:0006629 lipid metabolic process biological_process
GO:0055114 oxidation-reduction process biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0016627 oxidoreductase activity, acting on the CH-CH group of donors molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183125 lncRNA downstream 159613 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 603323 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 618305 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 871520 15261347 ~ 15266948 (-) True G145441
TU182932 lncRNA downstream 880804 15255889 ~ 15257664 (-) True G145436
TU183239 lncRNA upstream 207862 16374662 ~ 16375417 (-) True G145680
TU183346 lncRNA upstream 797403 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 1376363 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1857965 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 2131047 18297847 ~ 18298103 (-) True G146022
AMCG00005124 mRNA downstream 80993 16046479 ~ 16057475 (-) True AMCG00005124
AMCG00005123 mRNA downstream 92721 16043201 ~ 16045747 (-) True AMCG00005123
AMCG00005114 mRNA downstream 162547 15958704 ~ 15975921 (-) False AMCG00005114
AMCG00005113 mRNA downstream 182396 15954464 ~ 15956072 (-) True AMCG00005113
AMCG00005115 mRNA downstream 186177 15947528 ~ 15952291 (-) True AMCG00005115
AMCG00005125 mRNA upstream 24369 16191169 ~ 16205201 (-) True AMCG00005125
AMCG00005128 mRNA upstream 62557 16229357 ~ 16302453 (-) True AMCG00005128
AMCG00005129 mRNA upstream 145961 16312761 ~ 16317301 (-) True AMCG00005129
AMCG00005136 mRNA upstream 606867 16773667 ~ 16775958 (-) True AMCG00005136
AMCG00005140 mRNA upstream 615456 16782256 ~ 16799686 (-) True AMCG00005140
TU182803 other downstream 1170845 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 2801722 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 3982090 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 3982090 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7231874 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2847747 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 3403259 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 3591432 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3853910 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3853910 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile