RNA id: AMCG00005140


Basic Information

Item Value
RNA id AMCG00005140
length 4359
RNA type mRNA
GC content 0.38
exon number 7
gene id AMCG00005140
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16782256 ~ 16799686 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtttcttgttttgacAATGCCTAACATATTTCGTTTGGTGTCAGGTCATTCGGTGTCAAGTTCACCAAAGATGCTGGTTATCCGTGACTACCGTGGGGTTCCCCCGCCGTTGACTGGACCCCCTCTGAATATCGCACCTGGCAATATTATTGAGTTGATCGGTGCAGACATTCACAGCACCTGGTGGCAGGGCAGAATTCTGACAACCAGAGAAGTTGGCTTCTTTCCCAGGGATTCAGTGAAGCCCTGCCCATGTGTTCCAAGGCCAGTTGATTACTCGGCACAAACATGgtTTGCTGGGCCAATGGAGAGGTTACAGGCAGAAACAGAACTGATAAACAGAGGAAACAGCACGTACCTAGTCAGGCACAGGAGCAAGGAATGCACCGAATACGCCATCAGTATAAAGTATAACAATGATGTGAAGCATATCAAGATCCTAACCAGGGATGGCTTTTTCTACATTGCAGAGAATAAGAAGTTTAAAAGCATATTAGTAATGTTCACTCCCAAAGTAATTGGTATTGCGATTGCCCGATATGACTTCTGCTCCCGAGACACAAGAGAGCTGTCCTTACAGGAAGGAGATGTGGTGAAAATCTACACAAAATCAGGCGCCAATGGCTGGTGGAGAGGGGAGGCTAATGGCAGGatGGGCTGGTTTCCCTCCACCTATgtagaagaggaggaggaatgacggAGGGAGTAAAGCCTGTTGGAAGCGAAGCATCGCTGTGGACCACGGTGAATTGCACACTGCTGTGTCTCTGTTGTCGGCTTGGAAATGAAAAAACGTGCACAACACTGCTGTCTATCCAAGAAACCATGCCTATAAAATGTTGGGAATTCTCCACAAGCTTGTGTTGACAGATTAATGGCTTGCCTGCAGCTTTACAAGTAAGAGCCTGCCAGTCTGCTGTCAATAGGGACCAGCTCAGAGCCAGAACCTCTCACTCCCTGAAGAACTTCACAAATATAGACAGCTTTATTCTTCTTGTCATTCTTCCTACCAGCACGCAGTGTCAGCCTGGCTgatggtaaatatttaaatacatttccacccCCAGCTAAGACTCTCCTTGATGAGTTGGAAAAGTCCTGAGCTGTTTCATTTTACCTCACAGATACTTTTTTCGTCCTGACCTTCCCCGCGTCCTACTTACCTATGTTATTATTGATGACTTCATCTGCAGTCTTTGCTCTCGAAGCGAAGGCTGTAAGACTGTAAGCGCTCCATCACGTAACCCCTTTCAGCACAGATTACAATCACTACCTTGGACTCGGCACTAGAAATCGCGACACATTCGctctaaaaaaagaaagtcactGCTACATGAgaataattgatttatatatgttttaggctgaaagaaaaatgcaaatgtgtcgCAGCAAGCTTATCTCAAAAGACATATTGTTAGTTGTCACACTTTATCTGCCGTTCAGATTACTAAAATGTTAGGAAATGTGATCTGACTGAAGTACAGTACAAGCTgtcaagaaacaacaacaaaaaataggaATCGTTCTTTACTGGtaaacattttaacacagtGCCTCTAGCTTTCCATTTGAAAtggatataattaaattatatgggTGTTGGGATGGCACTCCAGTCTTAATCCAATTATGGATGTCTGGATtcataatatgtatatttattaaagtaattgttttatacAGTATCATTTGAAATTTGGTAAATTTAAATCATACTGAAAAAATTAATACCTGCATGACTTATAAATATTAGCACAATTACAGTATTCGCTCACactgtaatacaattcaaattatttcttgtttgattGGCAGTATGGTTTTACAGAACCCAACGTGTTTACATCGGTTTTATACAATGTGTATAGTGGCTCCAAGCGTGTTTGCCCCCATTGAATGTTTACTTACTGGAGCTGCTGTAAATAGGAGTAGTGTCTTTGTTTTACGAACTGGAtaggaaatacaattattttaagtaattatgaGGTGTACGCATTATTCACGGAGTTGCAGCACTATGTTTGTGGAGGCACATTCGCAAGTTTGATGTTAGGCGTGAAACAGTTCAACTAATTAACCAATTTCAGCTCTGATTTCTTCCAAACCTTGCTGTGTCTGGTTACAACATGAAAGCGATGGCCATTGTGGAAATGGTTCTCCGCTTTTCTTTGATGAACTGATTCCATTCATTGTTACTTGTCTTGGGTAGTTATATCATCCTTACCTGTTGAATTTCTTTCGCTGAAATGAATCATGGTTTCCTTATCAAGAAGTATcataaaaaggtttaatttagTTACAAACCAAACCCAGAAATGAGAAATAATCACATGAAGAAATATGTCTGTCTGATATCTATAGAAATGTcttctgccttttttatttgacttaatCTCACTGGCAAAATGTGTTCCAGAAAAAATGTTGTAGTAAACAAAGACAATATATGCTGATCAGCTTTTAAGATACACCTCTCTTAAGTATTTTTCTCCcacaatattaattaacaataagtgataataaactaaacaatacTGCTCTCAGTAATTATGTGGAGAACCTCACGACCTGACctggtcttctgttttttttcaattgaaCTTAAGTTAATGTTACATCACTGTGTGCATTCTACATTAGTGCATCTTTATTACACAAAGAAGCATTTGGTGCTTTAATTTAGctgatcagtatatatatatatatatgtacagacacttgtaaaatggttaaaaaatgctataaatacTGTTTGTTCGCAGCATGTATTCAGGGAAATTTCTTCATAGAAAACTATAGTACTGGATGTAACCTATTGTGAACTATGTAGATTTGTAAATTAcaagagtttttattattattattattattgttattattgttgttgattttaattttctttatttttttgtacagtgttaaatgtattttgagttGGTTCTCTAAAAGCCAGCTCTTGTACTCTCTCTGCACTAAGTATTATCAGACATTTTTCTGGCACTTCactgcaaaacagaaatgtttattttgtgtgtgtatgttttttttttttcttttcaattggGAGATGTCTGAATTATCTAGACGTGTTACCTTTCTCAAAGCTCCGAGAAGCATTCCAGCTTAGCGGCCACTAGATGTCAGCATTCAAAAAAGAGTTAAACCGCTTTTTAGCAGTTCGTTTCTGAAAGCGCTGAAATGCCTGGAATCCTCCACTTCCGTCAATATGGTGGGAAATTATTTACATGGCCTAATTTGAAAGTTATCTGTGTTGATGATGTTTGAATACCTTAATTATATACCCATCTGTTACTATGCAGCACAAAATGCTATGAGATGCCTTTTATCTTTAACTTccactgtgctgtgctttgaATAAGAACCAGCTGTAAAGTAGCGCTTTTCAAAACCAGAGGCAATATACAGCTGTTAGATATATTGCTTTTTCCTCCAGGCCCCTCAACAAGTATCAAATTAGATGTGTCCTTGACAAACATTGTATTCCTATAATAATCATGGGTGGATAATCAAGTTTTTCCAGGTCACCAATCAAATGATTTTGTGTTAGTCTATGCATAGGATAAGCAGCTTTAGCCTTTTACATAAATCAGGAGGTTGTCCACATGGGCGTGAGATTAACGGTGCTGGTTAGCACGTTGGTGTTTGGACTAAGAAGAGAGGCACAAGAATTGGTTTTCTAAGCTTTCACTGCAGTAATCTGTTCGCACTTCTTTACCCAGAGGATGAACTCTGACAACAGGGACTTAGCAGCTGCTGTATAAAAATATCATCCTTACTTCTTACTGTTGCAACTCCAATCATCCGATAATCTCTTAACCCTAAAATGGCTCATTACACATTAAACCTAATTTTTATAAAAGAGGGAATTCTCTGTAGCTTCCTAACAGCTTTGTAATGGGATGGAAACTGCCGTAGATGAAAACCCAATTGCAGTAAGTCTTGACAATAATACTCCCATCATACGCTGCATAAtcatggaattaaaatattcatcTAGACAAAATACAGCAATAACAAGTCATTAACACCTGGAAATGAAAGCTATACTAAAAACTGTTCAACAGACAACATTTTTGTGCAAATCACGTTAATCCAGGAATATTCATTAAACAGGACAtgtattgtgatatattttagaGACGGTGATCAATAAGAAGATTCCACACTGAAGCCAAAGATGTTTATATACTTCACATGAACAATTCACACCTTGGGATGCTTCCAATTGTTGCCTAATATTTAGCCGTGCAATCTGAGATTGTTATATCACGTACTCgtgtactatactgtacaaaTGTATATGACATGCAATAAACTGTATATAGATCTTTTC

Function

GO:

id name namespace
GO:0035023 regulation of Rho protein signal transduction biological_process
GO:0005085 guanyl-nucleotide exchange factor activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 406839 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 803401 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1247111 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1262093 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1515308 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 164517 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 743477 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1225079 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1498161 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1552181 18351867 ~ 18352132 (-) True G146023
AMCG00005136 mRNA downstream 6298 16773667 ~ 16775958 (-) True AMCG00005136
AMCG00005129 mRNA downstream 464955 16312761 ~ 16317301 (-) True AMCG00005129
AMCG00005128 mRNA downstream 479803 16229357 ~ 16302453 (-) True AMCG00005128
AMCG00005125 mRNA downstream 577055 16191169 ~ 16205201 (-) True AMCG00005125
AMCG00005133 mRNA downstream 615456 16138468 ~ 16166800 (-) True AMCG00005133
AMCG00005141 mRNA upstream 6557 16806243 ~ 16809658 (-) True AMCG00005141
AMCG00005142 mRNA upstream 13459 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005143 mRNA upstream 50116 16849802 ~ 16850062 (-) True AMCG00005143
AMCG00005139 mRNA upstream 63292 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005148 mRNA upstream 104214 16903900 ~ 16907830 (-) True AMCG00005148
TU182803 other downstream 1814633 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3445510 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4625878 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4625878 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7875662 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2214861 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2770373 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2958546 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3221024 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3221024 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile