RNA id: AMCG00005141


Basic Information

Item Value
RNA id AMCG00005141
length 426
RNA type mRNA
GC content 0.43
exon number 5
gene id AMCG00005141
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16806243 ~ 16809658 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAAGGACCTGGCTCAGTATGTCAATGAAGTGAAGAGAGACAACGAAACGTTGCGAGAGATTGACCAGTTTCAGAGATCCATTGAAAACCTGAACCAGTCTCTGAAAAACTACGGAAGACCAAAAGTGGATGGCGAAGTGCGGGTAGCTTCACTAGATAAACGGGCCAAACAAGACAGGCATATCTTCTTGTTCGACAAAGCAGTGATTGTTTGCAAGCGACGGGGCGACAACTATGAAATGAAAGAGGTGATCGACCTCAACAACTTCAAAATCACCAACAACCCCAccacagacaaagaaaacagaaagtgGTCTTATGGATTCTACCTCATTCATAACCAGGGACAAAACGGATTTGAattctttttcaaaacaaaagagcTGAAGAAAAAGTGGCTTGAACAGTTTGGAATGGCGATGTGA

Function

GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 430826 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 827388 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1271098 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1286080 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1539295 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 154545 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 733505 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1215107 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1488189 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1542209 18351867 ~ 18352132 (-) True G146023
AMCG00005140 mRNA downstream 6557 16782256 ~ 16799686 (-) True AMCG00005140
AMCG00005136 mRNA downstream 30285 16773667 ~ 16775958 (-) True AMCG00005136
AMCG00005129 mRNA downstream 488942 16312761 ~ 16317301 (-) True AMCG00005129
AMCG00005128 mRNA downstream 503790 16229357 ~ 16302453 (-) True AMCG00005128
AMCG00005125 mRNA downstream 601042 16191169 ~ 16205201 (-) True AMCG00005125
AMCG00005142 mRNA upstream 3487 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005143 mRNA upstream 40144 16849802 ~ 16850062 (-) True AMCG00005143
AMCG00005139 mRNA upstream 53320 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005148 mRNA upstream 94242 16903900 ~ 16907830 (-) True AMCG00005148
AMCG00005152 mRNA upstream 105599 16915257 ~ 16920464 (-) True AMCG00005152
TU182803 other downstream 1838620 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3469497 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4649865 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4649865 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7899649 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2204889 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2760401 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2948574 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3211052 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3211052 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile