RNA id: AMCG00005143


Basic Information

Item Value
RNA id AMCG00005143
length 261
RNA type mRNA
GC content 0.52
exon number 1
gene id AMCG00005143
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16849802 ~ 16850062 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGATGGAGCCTTGGAGGCAATGCGCGCTGTGGCTGATCAATTGCAAGGTGCTGCCGCCCAACCACCGGGTAACATGGGAGTCTGCCCAGGTGTTTGATTTAGCCCAGACCCTGAGGGACGGGGTCCTTCTGTGCCAGCTTCTCAACAACCTCAGACCTCAGTCCATCAACCTGAAAGAGATCAACCTGAGACCGCAGATGTCACAGGTAAGCAAGGATACTGTTTGTTACTGTGATCATGAGCCAGTAGTTTTTGAGTAG

Function

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 474385 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 870947 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1314657 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1329639 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1582854 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 114141 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 693101 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1174703 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1447785 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1501805 18351867 ~ 18352132 (-) True G146023
AMCG00005142 mRNA downstream 35148 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005141 mRNA downstream 40144 16806243 ~ 16809658 (-) True AMCG00005141
AMCG00005140 mRNA downstream 50116 16782256 ~ 16799686 (-) True AMCG00005140
AMCG00005136 mRNA downstream 73844 16773667 ~ 16775958 (-) True AMCG00005136
AMCG00005129 mRNA downstream 532501 16312761 ~ 16317301 (-) True AMCG00005129
AMCG00005139 mRNA upstream 12916 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005148 mRNA upstream 53838 16903900 ~ 16907830 (-) True AMCG00005148
AMCG00005152 mRNA upstream 65195 16915257 ~ 16920464 (-) True AMCG00005152
AMCG00005151 mRNA upstream 70407 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005150 mRNA upstream 104813 16954875 ~ 16960869 (-) True AMCG00005150
TU182803 other downstream 1882179 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3513056 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4693424 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4693424 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7943208 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2164485 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2719997 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2908170 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3170648 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3170648 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile