RNA id: AMCG00005148


Basic Information

Item Value
RNA id AMCG00005148
length 2404
RNA type mRNA
GC content 0.42
exon number 7
gene id AMCG00005148
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16903900 ~ 16907830 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAagacattatattaaataataacgCGTGTATGTTAAGGAGGGGGGTGTCTCTAATACAATCCAGCTACATTGGGTTAAAAAAACAGAGAGGACTTTGAATATGAAGAGAAACAAGTAGGAGGGGAATCGCCACTTGCACTCCCACAATGCATCGCTTCGGCTAAGACGGAAGTGCCCATGTTGAAACTGCAAACAAGATGGCCGCTGTAGGATAGAATAACACCGCGACTCATGAAAGAAGCGGAAAAGCTCCGACGTAGTTAAGCCACATCCAATTAGATCCGAGGACACGGGTTTAAAATCGTGACTGGAGGATTGCTGTGGCAAGATGGTGTGAGGATCTACAGTGTGGGAAGTGTACCTGAATTGAAAAGCATCAATCATGGAGTCGGGGAAGTTCTGTCCTCCACTGTACCTGCAACGCTATCAGTTTGTCATAGATTTCGTTAACAAATACAATCCTAAAAAGCTGGCAGACCTGGGATGTGCCGACTGTAGTCTTTTACGGAAGCTCAAGTTTCACCGATGCATAGAGCTGCTGGCTGGCGTGGATATTGATAGTGTTGCGCTCAGAGAGAAGATGTATACTTTAGCACCGTTATCCTGTGACTACCTGCAGCCCAGTGACCGACCCTTAACCATCAAGCTTTATGAAGGATCTGTATTAGAAAAGGAATCCCACATAAAAGGGTTTGATTTGGTGACCTGTATTGAGCTGATTGAGCACCTGCAGCTCCCAGAGATTGGGAAGTTTTCGGAGGTGCTGTTTGGCTACATGTCCCCAGCCGCGGTGATTGTCAGCACTCCTAATGCAGAGTTCAATGCCTTACTGCCAGGACTCACTGGGTTTAGACACCAGGATCATAAATTTGAATGGACACAGGCAGAGTTTCAAAAGTGGGCTTTAGATGTCTGCCGTTCTCATGGCTATGCGGTGGAGTTCACTGGAGTTGGAGAGGCGCCGTTCAGCACTGAGAACAGAGGCTTCTGTACACAGATCGCAGTGTTTCATAAGACATTCGGAAGTGACAAACAGCTGGGGACAGACCCTGAGGAGGAGTTGCATGCATACAAACTAgtgTATGATGTGGAGTACCCTAGTCTCTGTGACCACAAAATCTTTCGGAATATCCTGGTTAACGAAGTGATTTACTGCGCTGGAACAATTAAGACCAGGTTACTGGAGTCCTCCGAGGACAAGGAAACCCTTCCTCATGTGTGCCTTGCTTCAATAAACACCAGTGGCAGTAAGGAACCACTTCTTATGGATATGGGGACAGACAATGAGCCCTATCTGGAGGGAAATGCCATCTACATTCCTCTGGCTAAGCTCTTGTCTTTCCCGAAGGTGCACAGACTGTGCAAGTCTCTTCTGCGTCTGAAAGAAGTTCTGTTGGAGACTTCCCAAGTTACACTGAGCAGCGATGCTGAATCTTTGCAGTTGCTGGCTGATAGTGTGGATGGCTGCGATTTGGAGGACTGGGAGGGCTGTGGGGATGCAGAGAACAATGAAACATCTGGATCCTCGGCAGCTTATGAGGAAGACTGGGATGAGGAACTTTTAAGACAATCTTTTCAATCTTAAGTAATACAAATGCTGTTTAGtctcctgtttgtgtgtgtaaatttaCATTACAGAGGTTAATGATAAATTCCTTGGACTGTTGAAAGACtattaaagcttttttctttgtaaataatttaaattccttATATTAAGCATATATATGTTCAAACAGAATATTAATATCTGTTATCAGTCAATTGCTTTGTGAGACAGTTATTGAACAAAACCTTACAAAGTATTTGTTTACAATACCTTCTCTTTATGTATACAATGGGATATTAAAAATTCAGCTGATGAAAAGCATGACTAAATGTAAATCCtggctgttgtttttgtgagtCTTACAGCTGTGCCACTGCATAATTTAGACTGCAAATTGtttttccatatatttattaGTGGTCGATATAGCTGGGGAAAAAGCTTCAATTctgtttgtgtcattttttccaaaaagaaaagtgcTTATGAACTATTTTGAAAGCCAGTGCTTGGGAATATATTTCCCTAATGTGTCAGGGCTGTTTGATATGTGAATCTGTGCtgatgttttgcatttcaatatctGAGAAGGAAGCAGCAACATACTTCCTTCCAAGATGTGGACCCATCTTAACACTTTCACAGAAGTATAGGGGATAAAATACAGAACACTACGGTGCTTCCAGGACAAACCAGGAGTCGAGGCATGAAAATAAACCAGTCTTTTTGTGGTGGAGGTTAAAGCATGAAGAACAGTCCCAGTGTTAATGAGAAGGGGATCCATATTTTTATAGAAACATGTATTGCTTTTAATCGTTTAAACTCAAAGAATCTgctttagattttatttttt

Function

GO:

id name namespace
GO:0001510 RNA methylation biological_process
GO:0048599 oocyte development biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0043186 P granule cellular_component
GO:0008171 O-methyltransferase activity molecular_function
GO:0008173 RNA methyltransferase activity molecular_function

KEGG:

id description
K20798 HENMT1; small RNA 2'-O-methyltransferase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 528483 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 925045 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1368755 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1383737 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1636952 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 56373 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 635333 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1116935 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1390017 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1444037 18351867 ~ 18352132 (-) True G146023
AMCG00005139 mRNA downstream 28645 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005143 mRNA downstream 53838 16849802 ~ 16850062 (-) True AMCG00005143
AMCG00005142 mRNA downstream 89246 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005141 mRNA downstream 94242 16806243 ~ 16809658 (-) True AMCG00005141
AMCG00005140 mRNA downstream 104214 16782256 ~ 16799686 (-) True AMCG00005140
AMCG00005152 mRNA upstream 7427 16915257 ~ 16920464 (-) True AMCG00005152
AMCG00005151 mRNA upstream 12639 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005150 mRNA upstream 47045 16954875 ~ 16960869 (-) True AMCG00005150
AMCG00005149 mRNA upstream 67753 16975583 ~ 16980358 (-) True AMCG00005149
AMCG00005165 mRNA upstream 97480 17005310 ~ 17033426 (-) True AMCG00005165
TU182803 other downstream 1936277 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3567154 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4747522 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4747522 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 7997306 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2106717 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2662229 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2850402 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3112880 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3112880 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile