RNA id: AMCG00005149


Basic Information

Item Value
RNA id AMCG00005149
length 1593
RNA type mRNA
GC content 0.44
exon number 6
gene id AMCG00005149
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16975583 ~ 16980358 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGAGGATCTGCTAGTGCAAAGATGCAATATACCTGGAGACACCAGTGATGAAGACCAAGAAGACCTTCCGTATGATGGAGACCTTCACGATAATGATAAATATACGGTTGGCGAGCGTAACTCTGATATCAATGAACAAACTGTAATACCTTCAGTATCTGGTGAAAAACTCTCAGTTCAGCCTGCTGCAAGGAATACGTTTGAAACAACCAATATCCCCAACAGTACACCTTCTCTTCCTGTTTTAGAGCGTGGAACTGAAGAAAATGAGATAGAAAATCATTCCTCGGAGGATATTGTTGGCAGCTACCTCACATCTGTAAATCTCAAAGATGGCAGAACTCATCTACAGCTCAGGAATGATACAAAGGTTGGAGACACTCTTGAAATCGGTGATCAGGAAACACCCCGGTCAAGGATCACAGAGGTACTCCTTCGACACTTCTCTGAAGAAGATTTCAATAGCTTAAGCAAAGACATAGAAGCCGAGACAATGCCTGAGACTTCTTTTACTGAAAGCGTTGATGAAACAGTATTGAACAAATCTGACCTGCAGAAATCTAACCACATGTCACAACAATCTAATGAAGGGTGCAGTGAAAATGGCTTAGAAGAGAATGTAACAACTGAACCTAATAAAGAAACTGAGCATGCCATCTGGAATGAGACAGAAGAGTCTAGTACAACCGAGTTACAGAAATCCACTGACACCCTGGGGGCAGAAAGCAGTCTCGCCGCATCTAATGACGAACATGAATCCGAACGATGGAGCAGACCAGAGAGTCCAGGCTTGCAAGATTACGAAGATACCCAACGGTCTGTTTTAGGAAGAGCTTGGTCATGTAATGAGCTGAAATATGGACAAGGCCAGGTTCATTATCCTCTCCCTGATTTTTCCAAGGTGGCTCCTAAAATTAGAATCCCTAAAGGAAACTCTGCTGGGCGGACTGGGCAGACCTGTGGAATTGTGAGGATTAAGTCCTCCCCAGGACTGCTGAGCAAATCTCCAGCTCCCACTTCAGTGGAAACCATAAGGAAAGTCCTTGACACCATTCAGACACCAGAtaccacatttgttttaactgaCCAACAAAGAAGACCAGATGATCCCAGACAGAGTCCAGAACTTGTTCAACATTTGCAGGAAATGGTAAAGTCGGGAAAGGTGCAGAACTACTCGACAGCAACACTGAGGAAACTGGTCTCCAGGGACCAAGTGGAAGAATTTAGAAACTGTCTGAACTCAATGTCTTTAGGGATCAAAGAACAGCAAGAGAGTTTAGTTGATGCCCAAGATAAATTAGAAAGGAGTTACATGGCCAAGAAAGAAGAACACCGTGCGCTCGAGCTACGGAAGTATATGGGAATGTCTAAAAACATTGGGGAATTTGATCCTGAAAGGCAGGTGGAGGGAGAAATATTTAGAATAGGAATGGGCCTGGAAGACATTAAAGAGCAGATTGATGAAAATGTGTGCTCTCAGCTTTCGCCACAAATATCATTCACCTCACCGGCTCCATTGCCATTTGCTGACTCCATCTTCTCATCTAATACATCACTGCATGAGcCAGGAAGCTATATGCAAGTCTGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183346 lncRNA downstream 10509 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 600166 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 996728 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1440438 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1455420 15503271 ~ 15520163 (-) False AMCG00005111
TU183496 lncRNA upstream 562805 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1044407 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1317489 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1371509 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1761526 18741884 ~ 18753533 (-) False AMCG00005207
AMCG00005150 mRNA downstream 14714 16954875 ~ 16960869 (-) True AMCG00005150
AMCG00005151 mRNA downstream 31407 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005152 mRNA downstream 55119 16915257 ~ 16920464 (-) True AMCG00005152
AMCG00005148 mRNA downstream 67753 16903900 ~ 16907830 (-) True AMCG00005148
AMCG00005139 mRNA downstream 100328 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005165 mRNA upstream 24952 17005310 ~ 17033426 (-) True AMCG00005165
AMCG00005164 mRNA upstream 67687 17048045 ~ 17062557 (-) True AMCG00005164
AMCG00005163 mRNA upstream 84241 17064599 ~ 17087674 (-) True AMCG00005163
AMCG00005162 mRNA upstream 121169 17101527 ~ 17109305 (-) True AMCG00005162
AMCG00005154 mRNA upstream 244399 17224757 ~ 17241719 (-) True AMCG00005154
TU182803 other downstream 2007960 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3638837 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4819205 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4819205 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8068989 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2034189 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2589701 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2777874 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3040352 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3040352 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile