RNA id: AMCG00005150


Basic Information

Item Value
RNA id AMCG00005150
length 2600
RNA type mRNA
GC content 0.51
exon number 11
gene id AMCG00005150
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16954875 ~ 16960869 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGCACTTGGGTATTTCAGCTAACTGAACAAAAGAACTGTAGTGTgttataaacagaaaaaaagaaaaactaaaagctgTGATTGTCAAATTGAAAACTTAGATTTAAACCAGAAACAGCAGCGTTACCCCAAGGCAGCTCTGAGGTTTTTGGGGGGTCATAAAAAGAAGATGACGAAAATGGGAACTAACAGCTTATCACCTTTTAAactaattgttttcttaagcATGTGCATGTCTCAGatttCTGAAGCTCAGAGAGggatgtctgtgtctgtgtttacgGTAACATCCAAAAGTATTGTGGTGCGCTGGACTCAGGTTCCTGGTGTCCACTCATACAAGGTCACGGCTACTCCTAAGAACGCCCAAGTAACGCCAGTCTTCTCCCAGTTCAACGGAGCTATAACGATTGGGTCTGTTATTTACCTAATCCCGGATACAATCTACAATATGAAGGTAGAGGCTATAGATAGTAATGGCCTTGTCCTGGCACAAGCTGAAGTACTCGAAACCACAGCCCCTGATGTACCCAGCATTGACCAGGCGTACTCAAAACTGAGCAACAGCATCACCGTGGAGTGGAATCCGGTTCCCGGGGCCAGTGCTTACACTCTGAGAGCCGAGGACGGGATATCAGTCATTGAAACGTCAGTCACAGGCTCCCCAGGAACAGTGAGCAACCTAAAGCCTGCAACCCAGTACATCATCAGTGTCATGTCTGTCAACGCAGGAGGGAGAAGCCAGCCGTCTGTGCCCAAGAAAGCAAAGACAGTCCTTTCGGCACCGATACTTCATTCCAGCTCCCCCAGCAATTCCAGCATCGTTGTGACCTGGGAGCCAGTCTACATGGCTGTAGGTTACACATTCTCCATCATACAGACAAAAACAGGTCAACGGGTCAATGTGAACACCAGCCAGACCAACATCACTTTCACAAATCTCGAACCCGGGACAATCTATTCTATCAAAGGCAATGCCTGGGATTCCAGTAACACGCTGGGGGACGACTACACAATCAGCCAGATCACACGACCAGAAATCCCACAGAATGTACAAGTCTCCCTGAACGGCCGCTCCGTGGGGGCCATGGTCACCTGGACGTCTGTGGAAGGAGCGGATAACTTCACTGCTGCCAACTGGAATGGGCAGAACTGCTCCTActccttcccctcccccccctcctccacagTCAACATCTCCTGTGACATCACCCCACTGCTGTGCGGCCAGCAATATTCGATCACGGTGGTCGCCAGAAACAGAGCAGGCCCAAGCCAGCCCTCTGCTCCCGAGAAGTTTTTGACTTTTCCTTGTGCTCCAGAAAACATTACCATAGAGGAGCCTAACCCTGGGAATCTCACAGTGTCCTGGATTCGGGTAACCTATGCAGAATACTACGTGGCATTTGTGAAGAGTGACGATGGGATTGAAGAACAGTGCAACACCACGCAGACCAGGTGTGAATTCCACTGTCTGTGTGGCTTCACATACTTCGTCAGCGTCTTTGCTTATAACAGCGCCGGACAGAGTCCCATTGGAAACGTTTTGAACTACACTACTGCGCCGTGTTGTCCAGGGGATGTGATGCCAGCGTTTGTGTCTGGCGACACCCTGGAGATCACGTGGTCACCCGTCCGTGGTGCCGAGGTGTACCAGACGAAAGCTGCAGACGGGACCAGTCAGATCCACTGCAACGACACGGCCACCGTCTGTGCCCTGTCGGCCCTGCAGTGCAACACCAGATTCAGTCTGGTTGTCACATCTTGCAATGAGGTCCGGGGCTGCAATACCTCGTGTAAAACACATTACGCAGAGACAGCTCCCTGTTCCCCTGAGATACTGAGCATTGCTCAGGCCAGTGCGTCCAGTTTTAACATTTCATGGAGTACAAACAATAAAGAGGCAAATTACACCGTGAGAGCACTTGGCATGGCAGAGTCCCACACCTGTAGAACATCTGGAAGATCCTGTCAGATCACGGGACTGCCCTGTGGTTCCACCTATGATGTCAGCGCCATTGCCATCACATCTGTGGGACAGAGCCTGCCGAGCTACACCCGACCACTGGAGACAGGTCCCTGCTGCCCTAACAATCTGACGGTAACGCAGGCCACACAGGCTATGACCAATGTCACCTGGTCCACGGCAAAGGGAGCTCAGTCTTATATCACAATGCTGAAGTCGCCTCGAGGAGAGGCCAAGTGTCACACGCTGCAGACGCACTGCCTGCTGGGATGTATTACCTGTGGTACTAACTATACAGTGTCCCTGCAGGCCATCAGTGGCACCGGTCACATGTCAGAATGCACTTTCCACGGATTCTCCTCCAGTGCCTGCTGCCCCTCGAATGTCAGGCTCTACAGAATGTCCAACAACACGATTAGAGTATACTGGCGCTCCTCGGGCAATCTCCACAACTACACTGCTGACCTCTACGGGACGAGTGCCAACTACACCTGCACCCCCCCCCAGGGCCTCAGCTCCTGTGACATCTCTGAGATCTCGTGTGGGGATGTCTACTCTGTGGTGGTGGCCCCAGTTTCAATGGATGGATCAAAAGTCAAATTCTGTCcaaggaaaatgtattctgGTAAATAG

Function

GO: NA

KEGG:

id description
K24487 FNDC7; fibronectin type III domain-containing protein 7

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 579458 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 976020 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1419730 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1434712 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1687927 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 3334 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 582294 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1063896 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1336978 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1390998 18351867 ~ 18352132 (-) True G146023
AMCG00005151 mRNA downstream 10699 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005152 mRNA downstream 34411 16915257 ~ 16920464 (-) True AMCG00005152
AMCG00005148 mRNA downstream 47045 16903900 ~ 16907830 (-) True AMCG00005148
AMCG00005139 mRNA downstream 79620 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005143 mRNA downstream 104813 16849802 ~ 16850062 (-) True AMCG00005143
AMCG00005149 mRNA upstream 14714 16975583 ~ 16980358 (-) True AMCG00005149
AMCG00005165 mRNA upstream 44441 17005310 ~ 17033426 (-) True AMCG00005165
AMCG00005164 mRNA upstream 87176 17048045 ~ 17062557 (-) True AMCG00005164
AMCG00005163 mRNA upstream 103730 17064599 ~ 17087674 (-) True AMCG00005163
AMCG00005162 mRNA upstream 140658 17101527 ~ 17109305 (-) True AMCG00005162
TU182803 other downstream 1987252 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3618129 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4798497 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4798497 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8048281 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2053678 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2609190 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2797363 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3059841 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3059841 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile