RNA id: AMCG00005152


Basic Information

Item Value
RNA id AMCG00005152
length 2520
RNA type mRNA
GC content 0.52
exon number 10
gene id AMCG00005152
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 16915257 ~ 16920464 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAACTGTGCGACCCACAGGGCCCTGGTCTCGTGGGAGCCCAGTGCCGGGTCGGTGTGGTACACCGTGTCGGCCAGCAACCCCCGTGGCCGCGCTTCGTCTTGTGAGAGCCGAAGTACATCTTGTGAGCTCCCCGACCTGGCCTGCGGGGTGCTTTACAGTGTGCAGGTGATGGCTTCAGACTACAACTGTTCAAGTCTCCCCAGTCAAACTATTAACGTCCAAACAGTCCCCTGTACCCCTCTGATCATAGAAGCCCATCAGGACTGTTACACCAACACGGCTTTTAAATGGTCCTACTCTGTGACCTGGGAGCCCAGTGATGGGGCCACATCGTACACCGGCATTGCTCAGAGCAACGGGGGGTTCTCCTCCCAATGCAAAACCAACCTCACAACATGCCACTTCACCGACTTACTCTGCGGCTTGTCCTACAGTATAACCGTTACTGCCAAAGATAACACGTGTACAAGTTTTGAAAGCAATATCATGCAACTGAATACAGttcCCTGCGCGCCTCAGAATCTCACGACACAGTTAGAGTGCATCAACAACTCGGCCCTGGTGTTGTGGGAGCACGGAGAGGGCGTGGCTTCCTATGATGTTGTGGCTGTGGCCCCGGGTGGGCACAGGAAACACTGTAACACAAACTACAGCAGCTGTGAGCTGACAGGTTTAAACTGTGGGGAGATGTACAACCTGACAGTGACCTCGCTGGATGGACTGTGCAACAACGTGCTCGACGCCTCGTTTCTCCATTCAGCCCCGTGCCCTCCCCAGAATGTGGACGTTAACATGCTGTGTGATTCGGGGACATTGGAAGTCGGCTGGGAATCCACCCTGGGGGCTGATTTCTACATAGCGCAGGCTGTGGCCAAGAATGGCACGCAGTTTTCCTGCCGCACAGCCGGTTCCAGCTGCAATATAAGAAACCTAACGTGCGGACTTGTTTTGAGCGTTCAAGTCACAACCTTCTGGCATGCCTGTGGTAGTGCTCCCAGTGAAGCTGTTCTGATTTCAACAGCACCCTGTATTCCCCAACACTTGTTTGGTATTCTGGACTGTGTGACCAACTCAGCTTGGGTATCCTGGGACCACAGCACCGGGGCTCAGTCTTACACTGTGACGGCACAGGGCAAGGGAGGTCTCAGCTCCAACTGCAGTACCTCTAACACTACCTGCAATGTGCCGGATTTGAGCTGCGGGGTCCTCTACACGTTCTTTGTCACGGCCTTGGACCAGAACTGCAACAGTTCAAAGAGCAAACCTTTCGAAATCACAACAGGTACCTTTGCGAAAGTCAGATTTGGTAAAGATGATGGTTATGCAATACCACCCTGTGCCCTCACCACCATCACGGCTTTAAAACACTGCGACCGCAACACACTGCAAGTCCTGTGGGACTGGACGGATGCCTCTCAGATGTACATTGCAACGGCAGAAGGGAGTGACAGAAGCATGCTTTCTTGCAACAGCACCAGAGGAACCTGTGAACTGACCAACATACAGTGCGGCCTGCAGTACATCATTATTGTTGCGGCCTCTTCCGACAAGTGTAGCAGTCTGAGGAGCCCTCCATATAAAATCAATTCAGCCCCCTGTGCACCTCAAAATGTTAGTACTCACGCACAGTGCGAGTCCCGTGAAGTCATCGTGTCCTGGAATCCCTCATTCGGAGCCGAGTCGTATGTCATGAATGCCACTGGAAACGATGGCGATACACAATCCTGTAACACAACACAGACTTCCTGTACTCTCAGACAGATGCAGTGTGGCCGGTCCTACTCAGTCTCAGTGACGGCTGCAGATACTGAGTGCGTCAGCCCACCAAGCCCCGCCATGATGTTTAATACAGATCCCCTGTCCTGTGAGACCCAGGAGACTCGCTGCACTATAAGAGGACTGGATTGTGGCAGCATGTACAACTTTACAGTGCAAGCTTCTGATGGCATCTGTAACAGCTCAAACAGTGAGCTGGTACACAAAGGAGCAGCTCCCTGCCCACCGGAGATGGTGAAGACCAGCTTGATGCCCATGTACAGCATGGTCCAGGAGGTGAAGGTGACGTGGTCTGAGGTGAACTGTAGCGAGGTGCAGTATGAAGTTCTAATGAACGGGCAGGTTGAGAATGACGAACTGGGATACTTCCAGATGACTTCCTACTGGACATACGTCACGTTCTTCTTCATCCCTGTACCCTGCAGCTCCACTTTCAACCTGACCCTGAGGTCAAGCAACAAAGCAGGGGTCAGCAGTCCCACTAAAGTGGTCCAGGGACTTACAGCTCCCTGTGCCCCAGTGGGAGCTCTATACAATGGGAACAATGTTTCAGCAGTCATTTCATGGAATGCAACAGTTCATGCTACAGAATATGTAGTGTATAGTGTTTTCAATGCAAGCAGAACAGAGAAATGCAGAACACCACAACTTTCATGTACAgtagaaaacacagagagaagaaCCCTTCGAATCACTGCTCTGAACTCTGCTGGAGAGAGTGAACTTGCCACAGTCATTTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183239 lncRNA downstream 539840 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 936402 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1380112 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1395094 15503271 ~ 15520163 (-) False AMCG00005111
TU182938 lncRNA downstream 1648309 15261347 ~ 15266948 (-) True G145441
TU183346 lncRNA upstream 43739 16964203 ~ 16965074 (-) True G145760
TU183496 lncRNA upstream 622699 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 1104301 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1377383 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1431403 18351867 ~ 18352132 (-) True G146023
AMCG00005148 mRNA downstream 7427 16903900 ~ 16907830 (-) True AMCG00005148
AMCG00005139 mRNA downstream 40002 16862978 ~ 16875255 (-) True AMCG00005139
AMCG00005143 mRNA downstream 65195 16849802 ~ 16850062 (-) True AMCG00005143
AMCG00005142 mRNA downstream 100603 16813145 ~ 16814654 (-) True AMCG00005142
AMCG00005141 mRNA downstream 105599 16806243 ~ 16809658 (-) True AMCG00005141
AMCG00005151 mRNA upstream 5 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005150 mRNA upstream 34411 16954875 ~ 16960869 (-) True AMCG00005150
AMCG00005149 mRNA upstream 55119 16975583 ~ 16980358 (-) True AMCG00005149
AMCG00005165 mRNA upstream 84846 17005310 ~ 17033426 (-) True AMCG00005165
AMCG00005164 mRNA upstream 127581 17048045 ~ 17062557 (-) True AMCG00005164
TU182803 other downstream 1947634 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3578511 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4758879 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4758879 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8008663 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 2094083 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2649595 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2837768 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 3100246 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 3100246 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile