RNA id: AMCG00005158


Basic Information

Item Value
RNA id AMCG00005158
length 734
RNA type mRNA
GC content 0.41
exon number 3
gene id AMCG00005158
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17543146 ~ 17546332 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATACAGCCTACATGCATTGCACAGCAAACGTGCATACGTGATGTTAAAATCAATGAGACCAATCGTCTGCCAATACAGCAGCATGCATGCATTAGTGTGCAAATCTTTCAATATGACATCACTGCGTGCATCTGCCCGACACTGCAGCACGAAGAAGTGTTCAGAAGAACCAGCACCAGAAAGCGGTTCTCGGAGAAATGAGGGCAGCGACACAAATGCAGCTGTCAGCAGCGGCGGACGTCTTTCGGAAACATCTTTACCAGACACCGAGGAGAGGATCGCAAGAGCGCACCAGCAGGCCTGCGAGGCAAGCCAACAAACATATATAGACCCTGTTACCGGCTATGTGGTATTTACCAAATACGCTCATCTTCAGAGAGGGAAGTGTTGTGGCAGTGCCTGCAGACATTGTCCATATGGCCAAGTCAACGTCAAGGACCCAgttcaaaggaaaacatttaattctgtattttatgtgtagTAGTTAAGCTATGTAATTTTCGAAAGAAGAAACTCCAGAATATATCCCATCAGTACTAGACATTATAAAACTGTAAGCTAGTGTATATTGTGCTCCTgctgttttgaaaaatgcagtttcaatatcaaatgtattactCACGTGTATTGTAAACTGACAGATTTATTGTATAATCATATATTTTCTTAGTACAAGTGCTTTGCAAAAAAGAAGTTTACaatcttgaaaaaataaaaagacatgtATTCCAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183346 lncRNA downstream 578072 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1167729 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1564291 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 2008001 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 2022983 15503271 ~ 15520163 (-) False AMCG00005111
TU183641 lncRNA upstream 478615 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 751697 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 805717 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1195734 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1537845 19083995 ~ 19086041 (-) True G146189
AMCG00005157 mRNA downstream 12659 17522613 ~ 17530487 (-) True AMCG00005157
AMCG00005159 mRNA downstream 51760 17474522 ~ 17491386 (-) True AMCG00005159
AMCG00005156 mRNA downstream 109491 17401569 ~ 17433655 (-) True AMCG00005156
AMCG00005153 mRNA downstream 264592 17261914 ~ 17278554 (-) True AMCG00005153
AMCG00005154 mRNA downstream 301427 17224757 ~ 17241719 (-) True AMCG00005154
AMCG00005168 mRNA upstream 90546 17636696 ~ 17666606 (-) True AMCG00005168
AMCG00005176 mRNA upstream 148033 17694183 ~ 17699719 (-) True AMCG00005176
AMCG00005175 mRNA upstream 161568 17707718 ~ 17735224 (-) True AMCG00005175
AMCG00005177 mRNA upstream 189158 17735308 ~ 17744787 (-) True AMCG00005177
AMCG00005174 mRNA upstream 215270 17761420 ~ 17775426 (-) True AMCG00005174
TU182803 other downstream 2575523 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4206400 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5386768 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5386768 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8636552 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1468397 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2023909 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2212082 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2474560 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2474560 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile