RNA id: AMCG00005163


Basic Information

Item Value
RNA id AMCG00005163
length 7596
RNA type mRNA
GC content 0.43
exon number 16
gene id AMCG00005163
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17064599 ~ 17087674 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ctttcgcAGAGTGCACACTTGGCCATGATCGACACGCTGATGATGGCTTACACTGTGGAGATGGTGAGCGTGGAGAAGGTTGTGAAGTGCGTACAGAAGTACTCACCTTTTTATCCTGATGTCGATATGCCGTATGATACCGAGGATGCTGTCACCAGCTGGATTAATAAGgtAAATGAACACTTAAAAGACATCATCATCCAAGAGCAGAAGATCCGAGAAGCTCAGTGTTCAGAACCCTCTGGAGGACCAAGGGCTCGCTACAGGAAGGAACAGGCAATGCCAAGACAAATACCATGCATTCCCCCCGTGGACAACTTACTGAAAGACAGCACTGATGGCTGTGCACTGGCTGCTTTGATCCACTTCTACTGCCCAGACATCGTGAAGTTAGAAGATATCTGCTTGAAGGAGACCATGTCGTTGGCAGACAGCTTGTATAATCTACAGCTGATTCAGGAATTCTGTCAGGAGAACTTGAACCGATGTTGTCACTTCACGCTAGAAGACATGCTCTATGCCTCCTCCTCGATAAAGaATAACTACCTTGTGTTCATGGCAGAGCTGTTCTGGTGGTTTGAAGTGGTGAAGCCATCATTTGTACAACCCCGTGTTTTAGACCCTGAAgCTCCGGAGCCAGTCCAGCCACTGCGAAACATGCCTACAGTGCCCATTTCAAATGCCACCAAAAGAAGCTTTATTGAGAACCCTCCCAGTACAGACCAGTCCAGCCTGCCCTTGTCACCAGCAGAGTCTCTTCTGCCCCTCAGGCACACGCAACCACATCCTGAAATGGCCACTTCGGgtgtGATGAAAAGATCAACCTCGATGTCTTACATGGATGGTTGTGTTGGCACGTGGCCGAAGGAGAAACGGTCATCAGCTCATGGAGTATCCTTTGACATCCCATTCGACAAAGAGAACTCTATGCAGATGCCTTCAACCCGTAGTAAAGGGATGACCAGGTCTATCAGCACCGAAGGTCTAGGGTTTAAAGTCAATCACCTGCCCAGAAACATCAAGAGAAACCTCTCCTTCCAGCCTGTGAACGGgcaaaatgaaaaggaaggCATTGAGGAGGAAGCGTTTACAGAGTGTCCCACAGGCAGAGAGTCCTCTGGCAAGTGGCCAGGAAGAGCGAACAAGAGGGGCCAGCACGGGCTTTCAAATGGCCCAGTCACGGATGACATTGGCAGTGTCACAGGGACTCCAAGTATTGAGGAAGCTTTGAAAATCATTCACAATTCTGGGAAACCCCACAGTGTACTTCAATCTGACAAGGTCAACAATGGATTTTTCCTCCATAGTCAGGATTTAGGAGATTTGGGTGCAAAGCCTAAAATGGAAGAAGCTGGTTTGGATTCGGTGGCAGAGACTAAGGGAGCTATGAGTCCTGATACTACAGAGGTGGACACGGGGATTAACGTGCGCACAGAAGATATTCAGGAGACCATGGACGAGGACTCCTCTCTGAGGGATTACACTGTGAGTATGGACTCGGACATGGACCATGACTATGAGTTGAAACCTGGCCACCCCAGGGAAATGACAAGCCCGTGTCCCAGCTCAGTCAGTACCAAGTCTCAGGCTGGGAGCACCGCATCCTCAAGCTCTGGGGTCAAGATGACCAGCTTTGCGGAACAGAAGTTCAAGAAGCTGAACCACGTTGATGGCAGGAGCAGCGGAAGCAGCTCCCAGAAAACCACTCCAGAGAGTTCGGAGTTAAATATCCCTCACATGGTGGCCTGGGCTCAAACCCCAGAGGAGAGCCCAGTCCGAGCGGCAGGGAGGGATCCCACCCAATTGTTGGCATCGGAGATGGTACAGCTGAGGATGAAGCTGGAGGAGAAGCGCCGGGCCATTGAAGCCCAGAAGAAGAAGGTGGAAGCAGCCTTCACAAGGCACAGGCAGAGAATGGGCAGAACAGCATTCCTGACCGTAGTGAAGAAAAAAGGAGACGGCACGTCACCTCTGAGGGAGGAGGCTGCTGGCTCAGAAGATGAGAAACTCTCCATGGAAAGCCAACCCTTTAAGGTGGCAGCAGACAACAACCTCAGGCCTGggaaatgtaaaactgaaattccAGATCATGTGGACCAGGCTCAGAACAGATGGCTGAAGTCTCCCAATGATGAGAGCTTGGGAGAAGTCGACCTGGTGGAGTACACCAAGTCCATTGAGAAACTCAACACATCTCTGAACTTCTTGCAGCAGGAGATGCAGCGCCTGGCTCAGCAGCAGGAGGTGATCATGCAGATGAGGGAGCAGCAGACGTGGGTGATCTCTCCTCCTCAGCCCTCTCCCCAGAAACAGATCCGGGAGCTCCGCACTGCCACCCGATCCACCGGATCCTTGTCGCCGGTGTTGTCCTCAGCAGAGTCTCCACGGACGTCCCACCGATCCCCAACGAGCATAAAGAGGAAATCTGCGTCCTTCCACTCCAAGACCCCAAGGACTCCCAGgccaaatgaattaaaaattgCTCCTCTCAACCGTATTCTAAACACGCCCCAGTCAGTCGATAGCCTCCCTCGCCTTCGCAGGTTCTCTCCCAGTCAGACCCAAACGAGCTCCTTCGTGTGCCTTGGTGATGATGCTAGCTTTCCCACTGAGACCTGGACCAAGGAGAAATATGCCACACAGGAACTCAAAGCAGCTCTATATGCAGAGGCAGAAGGTTCAGAGAAGAGTGAGTATGTGAAGCCAGCTGGCAAACCCAACAAGAGGGAGGAGTGGACAACAAGTGAGAAGGTTGCAGAGGCCGAGCTGGATAAGGAGATGAAGCCCATTGAATCCACAGTCTCAGAAGTGTTATCTCAGCCAATAATGGAGACGTTTACAGTTACCCCCACAGAAAACCCAAGTGATCTTATCGGCCAGAGTACTAGGAACCTGATTGAGGTTCCTCTGTCAGTGTTGAAGCCTCTGGACGGACAGGAACTGGAGGAAGTGGGAGAAGGGGAAACAGGTGGAGAGATGTACGATGAGGACCAGAAAATGTGCTGTGGATTCTTTTTTAAGGACGACATGAAAGGAGAGGACGACATGGCGCTGAAGCGGGCGGCGCTGCTGGAGAAGCGGCTGAGGCGAGAGAAGGAGACGCAGCAGAGGAAGCAGCAGCTGGAAGCGGAGCTGGAGCAGAAGAAAGAGGAAGCCCGGGTCAAGGCTGAAGAAGAGCGTCAAAAGAAAGAGGATGAGAAAGCACGCCGAGAGTTCATCAAGCAGGAATACCTCAGGAGGAAGCAGCTCAAGCTGATGGAAGACATGGACACGGTGATAAAGCCGCGCCCTGCCAGCTCCAAACCGAAGAAACCTCGTCCCAAATCTGTGCACAGGGATATAATGGAGTCCCCCAAAACCCCCGTCAGGGCACCGGCAGTCTCCAGCCTCTCTCTGGCCTCCCTGAATTTGGCCGACACTGACAGCGTGCACTCGGGCAAGAGGACGCCCAGAAGCAGTAACATAGCCTCTGGCAACCTTTACTACTTATTGAAATCTTCTAAACTGAAAAAGGCAAGGCCGGAGTCCGCCGATGGGTTTTTATCACCATGTCGTTCAGGCAGTCGCAATGGAGAGAAGGACTGGGAAAACGGCTCGACGACCTCTTCTGTGGCTTCCAATACAGAGTACACAGGGCCAAAGCTGTACAAGGAACCAAGTGCAAAGTCTAACAAGCACATCATCCAGAATGCTTTGTCTCATTGCTGTCTGGCAGGCAAAGTAAACGAGggccagaaaaataaaatactggagGAAATGGAGAAATCAGAGGCCAACAACTTTCTGATTCTGTTCCGGGATTCTGGGTGCCAGTTCAGGTCACTGTACACGTACTGCCCAGAAATGGAGGAGATCAACAAGCTGGCTGGCATTGGGCCCAAGTCCATCACCAGGAAGATGATCGAGGGGCTGTACAAATACAACTCTGACCGGAAGCAGTTCAGCCATATTCCTGCTAAAACCATGTCCGCAAGTGTCGACGCCATTACCATTCACAGTCACTTGTGGCAGACCAAGAAACCAGTAACGCCTAAAAAAGTTCTACCTTCCAAGTCATAGTAgtattgaacttttttttttttttatcaaaacatTCATGTTCAAATTGCACTTCACCTTAAATATCCATTTGGATTAGGCTGCTTTTGCTGCCAATGGACAACTAAAAGTatatcctgttttatttttcccagattttgtttttttccctcttagTTTGAACTGGACCCAGAACTCTACTGTCGTTATGCACAACTGGAATGTAAAACACTATTTAAGAGTATGAAATTGACATCACTAATGTGTTTAGTACAAAGAGATCATGAAATAGGAGTAATTTTATTAAagcacgcgtgtgtgtgtgtgtggttttgtatGTGCCAACAGAAAAGGTATGgatgtcatattttaatttggtacACTGAAGCACTGAATGTCAAACATCTGTATAGATTGAATTTTCATATCTGTTATCATTTGTGGCCttatgcttgttttattttgtatgcgaCTGCCATCAGGTGTTTGTGAGTTTGTTGTCTCATGAAAGGTTTTTGTCCACAAGTGATGCTTGTTACTTTATCGTGGTAGAAACATAACGTGTTAAGAGAAAGAAGATAAATGAGAAGTGTCCGGGGGTTCAGGGGTTCCAGGGAGATACCTTTACCAAATGTATTAGGTTCTACAGGTTTTGGATGAAATGTAGAATCAAAACAAGTCACTACATAAGTATTTATTCGTTTTTAGCAACTGTCAAAGGCAACAAACCCCtcatatatatagtgtttttgtttgtttatcctTAAAAAGTATGCTGTTTTACTCACATTTTCTCAACAGTATTGCACAATTTGCTTCAGGAAACATATGTTCACATCTACAGTCCAGGCAATATATAATTGACTGATTACAGACTATTACTGAACACAGAGCCTCTTTTACTCTTTAGCAAATACTAGTATTCAGTCAGTAGAGCTCAGTATTAGATCTGCTTAGTTTGGATTGTTTAGGTAGTTCCCAAAAACTCTGTTGCATATACATTAAGGAACGTACAACAGTAGACTTAATTGTCAATACAAGGCAAATGTAACTTTTGTAAATGTGGCGTCATATTCGGATCTCTTAATGAAAAGAGGCAAAGCCGGCAAGTCAAGCCAGAAGGCTTCACTTACCTGTTGTAAGCAGATTAGATATTGGTTCTAgacaattttaaatatagatttaataTACTGTCTATAAAGACAATATTTAACTAGTTTACAAttgtaaataatttgttttaatcaaggTGAATTATGAACACTGAATTCCAGTTTTCTTCCTGACTGCCATTTTCAACTGCTTAGTATGCTATGTGTCTGTATACAGCAGGTCTTATTACAACGCCGTGTTTCATGTCTGAAGGGTTGTGTCTATCATTGCTTATGTTGCCATTTTTTCTTTACTggttgaagaaaaaatatgtacttttatttCTACTTTATTGTGTTTCCCTTCATCAgtgtgtatactgtacatattttgGGCATATAAAGTATTTCATTGCTGAACTGTTTCCGTGTATGTGAGACCTATCCTCCCATCTTCTCTTTCTATAGTATGGTCTTccactaaatatatttaatcaatatggAAGCtcatgagaaaacaaataacttgAAAGTTTGGAAGGAAACCAGTTCACATACCTCCAGAATGCAGACAACcatctgtttttgtattaaaaaaaaaaaattttaaCCCCATATTGTTTGTCATCACAATTACCTAATTAAATAAGAGGCGCAGTGGGGTCTGCATGGGGCTAGATAACCAATTAGGGTGGGACAGAATATGCCCTTTTtttatcaaaagaaaataaatctgtcaagGTTCTTTGTTGTCATTACATAATGATATTCGTTAATGATGAATGGTTATGTGTTCTCGTGTATTCCAACTTAGGGTCAtccttttgaaatatttttttaaatgttatgataaTCAAGATGTGCAGTTCATCCAGTTTTTACATGCCATCCAATAGTTAAATTTATGTTCTTCTTTAACCTGTATCGAAAGAACGTTTTCATCTACTTAAAAAAGTCATCGTTTTACGAAATGAAGAGTGAtgtggttaaataaaaaaaatatatataaaaggtttGTCATTGGCTTATCCATACTATCTGCATGAACAAGGTAAAGATATGTAATTCtcaaaaattaaaactgtataaataaatgtatataaacctAAACGAGGGACTAAAATGCACATATATTCTGCCTGTAGACATGTCACAACAtgccattatttaaaaaagcagacgTAGGTGTTGGCAGAATTACAGATCATAACGAGTGCAGGCAGAATGTTGTACTTAAAGCAGACTATTTTAAGACAAGTATTGGCATAACTGTCTAGGTTAAACCATCAGCATtcccattgttttaaatgattttaattactttgaaatTTACACTTTGGATTGTACCCACACTCTGTAAATAAATCCAGTTTAAATACACTTGAACCCTTTTTTATGTCCTGATATCATGTATTGTAAACAATATTGTGGATTAAGAGATGGCACTTCTTATTTGATCCATTTCTTTCACTTGCACTAGTGTAGAGGACTTTTCTAGAGATGCATCACTTTGCAACAGTTctgatatattttcttgttttgattgCATGTAGTATATTTCAGTGATGCCATTTGAGTTTAGTATTCTGTAGGCATAAAATGCTAGTGaacatgttcatttattttcttaactgtTGAATTGATATTagaaaatggaaatataatttatacaggTTGCTTTCCAATCTTGTACATATAAAGtccaatttgaatattttgcccaaataaaaagtgtcatatattttaatctgcagCTGATAATGAGACTGATCAgggtttaactttattttaaaactgctcATTTGTAAtcgtgttcattttaatttttctcttcTCGCCAAGTAACGATTCAGTGGCATTCCCTTGTACAATGTCTAAAGGTAGAATGTGCCTGACTATTTCTCTGTGTATTGGTAGAGAATTGTTGCTGTATGTTATATAAGTATGactattttcctttcttttctaaGCCTGCtagttttataattatatttaatcatcTTTAGTTTTGCGGGTTACCAGAAAACCTTATGCAGGTGGCAGATTTGAATGTCTGTCTCTAACACAAACACTGGTGCTCTCAGCGGGGTTTATAGAATTGCCAAACAagcagttgtgtgtgtttctgggacaaaaataaataaaagagtacTTTAAAAATCAGCAGTTACTTTGGTTACTGAAGCCTTTTGGGTTTCATTATGTTGAAAGAGGTATTATTTTAGGACAGCTAGTATAGTTGTCTTACTTGGCTGTTTAAAGCCAAAATGAATAgctatttaattgtaaatgggCACTGTTGAttattgtacagtgtgttgtgtgctaATCTGTCCACCTTGATGGAGCATTGCTTCAATTTTTTCAGACGCTGTGCTGTCATATATTGTCAACATATTGCTGAAGTAAcatgtagttttttgttttttttccttttgcatcaaataaaatgaagcatGGCCTCAAA

Function

GO: NA

KEGG:

id description
K17493 CAMSAP; calmodulin-regulated spectrin-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183346 lncRNA downstream 99525 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 689182 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1085744 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1529454 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1544436 15503271 ~ 15520163 (-) False AMCG00005111
TU183496 lncRNA upstream 455489 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 937091 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1210173 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1264193 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1654210 18741884 ~ 18753533 (-) False AMCG00005207
AMCG00005164 mRNA downstream 2042 17048045 ~ 17062557 (-) True AMCG00005164
AMCG00005165 mRNA downstream 31173 17005310 ~ 17033426 (-) True AMCG00005165
AMCG00005149 mRNA downstream 84241 16975583 ~ 16980358 (-) True AMCG00005149
AMCG00005150 mRNA downstream 103730 16954875 ~ 16960869 (-) True AMCG00005150
AMCG00005151 mRNA downstream 120423 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005162 mRNA upstream 13853 17101527 ~ 17109305 (-) True AMCG00005162
AMCG00005154 mRNA upstream 137083 17224757 ~ 17241719 (-) True AMCG00005154
AMCG00005153 mRNA upstream 174240 17261914 ~ 17278554 (-) True AMCG00005153
AMCG00005156 mRNA upstream 313895 17401569 ~ 17433655 (-) True AMCG00005156
AMCG00005159 mRNA upstream 386848 17474522 ~ 17491386 (-) True AMCG00005159
TU182803 other downstream 2096976 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3727853 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4908221 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4908221 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8158005 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1926873 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2482385 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2670558 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2933036 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2933036 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile