RNA id: AMCG00005164


Basic Information

Item Value
RNA id AMCG00005164
length 4688
RNA type mRNA
GC content 0.52
exon number 15
gene id AMCG00005164
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17048045 ~ 17062557 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CCGCCAGGGGTCCTCGGCCAGCCGGGGCGCAATGCGCTGCTCTGATTGGTCGGCGGGCTGCTCGGCTTGGCAACCAGAGCCGGGGTAGCGGAGACGGGGTGGGAGGAGACGACAACAGCGGGGCATCGGGAGAAACAAACAGGGTTTTACAGCTATATCGCAAAAACACACCGGCGAGACACTTCCCATCCTGCCCACCACCTCGAAGATCAAATTAATGCATTGATAGCGCGGAGGAGTTCATTTAAAAGCTGGCACCATGACAGCGGAGGAGACCATCAACATTAAGGAGGTCGAGATTATTAAACTGATCCTGGATTTTCTGAACTCTCGGAAGCTGCACATCAGTATGCTTGCTCTCGAGAAGGAGAGCGGGGTCATAAATGGCCTCTATTCCGATGACATGCTCTTTCTAAGGCAGCTCGTGCTTGATGGTCAATGGGATGAAGTTCTTCAGTTCATCCAGCCCCTGGAATGTATGGAGAAGTTTGACAGGAAGAGATTCCGATACATTATCCTGAAGCAGAAATTCCTTGAAGCCCTGTGTGTGAATAATGCAATGTCAGCAGAGGACGAGCCCCAGCATTTGGAGTTCACCATGCAGGAGGCGGTGAAGTGTCTCCACAACCTGGAGGAGTTCTGCCCCTCCAAGGATGACTACAGCAAGCTGTGCCTGCTGCTCACGCTGCCGCGGCTCACCAACCACGCCGAGTTCAAGGACTGGAACCCCAGCACGGCCCGGGTGCACTGCTTCGAGGAGGCCTGCGTCATGGTGGCCGAGTTCATCCCGGCTGACCGCAAGCTGAGCGAGGCCGGCTTCAAGGCCAGCAGCAACCGGCTCTTCCAGCTCCTCATCAAGGGCATGCTGTACGAGTGCTGCGTGGAGTTCTGCCAGAGCAAGGCCACCGGCGAGGAAATCACGGAGAGCGAGGTCCTGCTGGGCATCGACATGCTCTGCGGCAACGGCTGCGATGACCTCGACCTCAGCCTGCTCTCCTGGCTGCAGAACCTGTCGCCCAGCGTGTTCTCCTGCGCCTTCGAGCAGAAGATGCTCAACATCCACGTGGACAAGCTGGTGAAGCCCACGAAAGCCACGTACGCTGACCTCCTGACCCCCCTGATCAATAAGCTGTCCCCATACCCGTCCTCGCCCATGCGGAGACCGCAGTCGGCCGACACCTACATGTCTCGCTCTCTAAATCCCGCGCTGGATGGCCTCTCCTACGGCCTGTCCAATCACGACAAGAGAGTCACCGATTTCACGAACAAGACCTCGCCCATGTCGCACTCCTTCGCTAACTTCCAGTACCCCGGGGCCCAGAATCTGTCCAGGAGTTTAATGCTGGAGAGCACAGATTGCCACAGTATTTACGAGGAGTCTCCTGAGAGAACTGACACACCTGTTGATTCTATGCTGAACTCCGCCCAGCTTCCCACCGCTGCTGTGGCTCCAGGAGGGGAAACCGTGACTCCCGGATCTGCTGAGAAGAATGAGCTCCGGGACTCCACAGAGCAGTTCCAGGAGTACTACAGACAGAGGATGCGTGTGCAGCAGCACCTGGAGCAGAAGGAGCAGCAGAGACAGCTGTACCAGCAGATGTTACTAGAGGGAGGCGTCAACCAGGAAGATGGGCTGGACGCACAGCAGAACCTGACAGAGAAGTTCCTCAACAGGTCTATCCAGAAGCTGGAGGAGCTGAATGTGGGGATGGACAATCTGGGCGGGGAGGTGCAGTCTCTGACACAGCAGTGCAACGGGAACAGTGGGGTCAGCAGCCCGACCCCCGAGAGCGACGTCACGCTGACGAACGAGAAAAGCCAGCTGAAGGAGGACAGCAAAATCACCAGCAGCACCCCCCAGAAGATTGGGGGCAGGGGGGTCCCTTCACTAGACGAGTCCCCAGTTATAGGAACTCAGAGGAACCAAGAGGGTGAGAAACCGAAGACGCAGTTTGTTGCTGTCAGCACCCTGGAGGACACGCAGGCAGTCCGGGCGGTGGCCTTCCACCCCAGCGGAGCTCTGTACGCCGTGGGCTCCAACTCCAAAACCCTGCGCGTCTGTGCCTACCCGGACACCATCGACACGAGTCCGGGCAGCACCCCCAAGCAGCCTGTGGTGCGTTTCAAAAGGAACAAGCATCACAAGGGGTCGATATACTGCGTGGCCTGGAGTCACTGCGGACAGCTGCTGGCAACGGGCTCCAATGACAAATACGTCAAGGTGTTGCCCTTCAACGCAGAATCCTGCAATGCTACAGGTCCGGACCTCGAGTTCAGCATGCACGACGGCACCATCCGAGACCTGGCCTTCATGGAGGGCCCGGAGAGCGGGGGAGCCATCTTAATAAGCGCGGGGGCGGGTGACTGCAACATCTACACCACCGACTGCCAGAGGGGGCAGGGTCTGCACGCGCTGAGCGGCCACACAGGTCACATCTTGTCCCTGTACACCTGGGGCGGGTGGATGATTGCATCCGGTTCTCAGGACAAGACGGTGCGGTTCTGGGATCTCCGAGTGCCGAGCTGTGTGCGGGTGGTTGGCACGGCTTTCCACGGATCAGGGAGCGCCGTAGCCTCCGTGGCTGTGGACCCCAGCGGGCGTCTCCTCGCCACCGGCCAGGAGGACACCAGCTGCATGCTCTACGACATCAGAGGCGGCCGCATGGTCCAGACGTACCGCCCCCACTCCAGCGATGTCCGCTCGGTGCGCTTCTCCCCCGGGGCCCACTACCTGCTCACCGGCTCCTACGACACTAAAGTCATCATCACGGACCTGCAGGGGGATCTCACGAAGCAGCTGCCTCTCACGGTAGTCGGCGAGCATGCAGACAAGGTGATACAGTGCAGGTGGCACACACACGACCTCTCGTTCCTGTCCTCCTCGGCAGACAGAACTGTCACTCTCTGGGCCCACAGTGCGTAAGTTGGCTGCCGCCGGGAGAGACGAAGCACAGAGACTCCCCTAACGAACTGGAAAAAAGtcctttgtgaaaatgtaagcCGACGTGAATTCACCCCGAGGACAGACAGGAACAAACGGAGGCTCCTgaccatttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtctctctatgCTTCTGCAGATGGCcgtgttttgtattatttcgcTGTGCTTAGAGTCTTCCACTTGCATTACCGCTTCTGTGAGCGATTCTAGTCCTGGTCTAGTCCTGGACAGCGGCTCTCCTTTCCCTGTAAGTGTGCACAAGATAAAAGGCTTAAGAATAACGTGTTGACcgttttatttgttgtgttcctGAATCACATCTGCGGCGGATGAGTCAGGAGCGAATGCACAAGAGCTAAACCGACCCGCACACTCCTGAGGCCAGAGACGATCCCAACCGTTCATGCAAGGGCTTGAGTGCTCCGCTCTCGCGAGTTCAGTACAAACCCTGAACACCTGTTCAGACCGCAGTGTTAATGACATGGTGCCTTGATGAGTCAGTTTCCATAGATAGCTTTATTTCTATTCGTGACGTGATGGGCTGTATTTGGCAGTAAGTGCAAGGGCTCAAGCAAATAGCAGTGAAATAATTTTGACAGCATTTAATGTTCAAGATGTTGTTGAGGCAATGGCACCACGTGACATTATTTCTGCTACCCCGGCTGTGATTTCTAGATAATTTGCCTTTGCTAAATTAGTCGTTGTGAAGTATGACCCAGAGTTGGCGGCCAATTTCTCTTGGCTGACATGAATAACTGTCCATCACAGAGTCGGTGGACAAGCGGAGGTAGATGTGTCACACAGGTAATAATTGTAATCTGAAATCAGCAGAGAACAGATCGATCTTTCTGCTTCAGACATAGGTTACCAAACTCCTTCTGTTCACTTCTGTGtatataatgcaaatgtataaaagAACAGTTTTACAGatgtttctgatttatttaatacaaaatcattgttttatttttattctcagCTGCCACGGAGCTCCCCAATATATCGTGCTTGCAAAAATAATCTTAGCTTTGTAAAATGTCGATAGCTAGGAAGACCATGCAGTTactgatttttaaaacacattccaGTTAGTGTGGTGACTGTTTTCTTTGTGACACCCGTTGTTGTTGCGTCTAGCACTCGCCTTGTGAAAGGTAGGTATGATTGCATAGCTGATGGTCTAAAGCAGTTCATGTAACCACGTAACcaagttttcattttatcttGTTCTGAAGGCAGTCTGTGCCCATTCAAAAAGGGTAAAccctaaaaaataaaccatgaaacCGCAAATAAGATGAGAAAAGCATGGCATTCCACATAGGcatgttttgaaaagaaaatactacttttttccccaatatACTCCACCTTTCCCCCCCACTTATGTTCCTTTTGCACTTTGTTCTTGAAATACAACTGAACTGCTGTTTCTTAAGAAATGCggattgttgtattgtattaatgtttctgatttatttttttgtattgtacagtctctttttctttaaattaaaagccaaaataaaggtagatttattatatttaacttatttgtaatgtagtttgtttctgtttatattttatgagaGTGTTGTCTGTGCACATACTGAGCAGCTTTTACAAGCCTTGTTTAAAAAGTGACAGAAGTATTAGTCCTGGAAGTGTGACTGCTGTGTTTATCTCAATAAAAGCCTTTCTGACACGTCA

Function

GO: NA

KEGG:

id description
K24746 WDR47; WD repeat-containing protein 47

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183346 lncRNA downstream 82971 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 672628 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1069190 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 1512900 15503271 ~ 15535145 (-) False AMCG00005111
TU183041 lncRNA downstream 1527882 15503271 ~ 15520163 (-) False AMCG00005111
TU183496 lncRNA upstream 480606 17543163 ~ 17546332 (-) True AMCG00005158
TU183641 lncRNA upstream 962208 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 1235290 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 1289310 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1679327 18741884 ~ 18753533 (-) False AMCG00005207
AMCG00005165 mRNA downstream 14619 17005310 ~ 17033426 (-) True AMCG00005165
AMCG00005149 mRNA downstream 67687 16975583 ~ 16980358 (-) True AMCG00005149
AMCG00005150 mRNA downstream 87176 16954875 ~ 16960869 (-) True AMCG00005150
AMCG00005151 mRNA downstream 103869 16920469 ~ 16944176 (-) True AMCG00005151
AMCG00005152 mRNA downstream 127581 16915257 ~ 16920464 (-) True AMCG00005152
AMCG00005163 mRNA upstream 2042 17064599 ~ 17087674 (-) True AMCG00005163
AMCG00005162 mRNA upstream 38970 17101527 ~ 17109305 (-) True AMCG00005162
AMCG00005154 mRNA upstream 162200 17224757 ~ 17241719 (-) True AMCG00005154
AMCG00005153 mRNA upstream 199357 17261914 ~ 17278554 (-) True AMCG00005153
AMCG00005156 mRNA upstream 339012 17401569 ~ 17433655 (-) True AMCG00005156
TU182803 other downstream 2080422 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 3711299 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 4891667 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 4891667 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8141451 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1951990 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 2507502 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2695675 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2958153 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2958153 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00041902 True 3346 lncRNA 0.49 13 NC_007133.7 24560230 ~ 24591607 (+)