RNA id: AMCG00005171


Basic Information

Item Value
RNA id AMCG00005171
length 300
RNA type mRNA
GC content 0.47
exon number 2
gene id AMCG00005171
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17982339 ~ 17983368 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGAATTCCGCTTTGGCAAAGAAACTGATAGTAAAACCGCAGAAGAGAATAATTGTTGCCTGTTCTCAACtctcttctttgttttgtttaggatCTCGAACCCCAATTGTCATCATCCCTGCAGCTACGACTTCATTAATCACCATGCTTAATGCAAAAGAACTTCTTCAAGACCTGAAGACTCGTGCTAAGCCAGAGTTCAGGACATTGACAGCTGTTGACCGAATCGCTGCGCTCAGCCGTGCTTCCCCAGACCCGGCCGTTGAGAAGGATCAGGCCAGACCAGACAGACCAGCGTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183496 lncRNA downstream 436007 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 1017265 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1606922 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 2003484 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 2447194 15503271 ~ 15535145 (-) False AMCG00005111
TU183641 lncRNA upstream 41397 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 314479 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 368499 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 758516 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1100627 19083995 ~ 19086041 (-) True G146189
AMCG00005170 mRNA downstream 6690 17972354 ~ 17975649 (-) True AMCG00005170
AMCG00005174 mRNA downstream 206913 17761420 ~ 17775426 (-) True AMCG00005174
AMCG00005177 mRNA downstream 237552 17735308 ~ 17744787 (-) True AMCG00005177
AMCG00005175 mRNA downstream 247115 17707718 ~ 17735224 (-) True AMCG00005175
AMCG00005176 mRNA downstream 282620 17694183 ~ 17699719 (-) True AMCG00005176
AMCG00005185 mRNA upstream 28160 18011528 ~ 18022231 (-) True AMCG00005185
AMCG00005184 mRNA upstream 44875 18028243 ~ 18036344 (-) True AMCG00005184
AMCG00005183 mRNA upstream 63323 18046691 ~ 18049244 (-) True AMCG00005183
AMCG00005187 mRNA upstream 80461 18063829 ~ 18066368 (-) True AMCG00005187
AMCG00005186 mRNA upstream 87064 18070432 ~ 18073923 (-) True AMCG00005186
TU182803 other downstream 3014716 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4645593 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5825961 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5825961 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9075745 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1031179 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 1586691 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 1774864 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2037342 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2037342 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile