RNA id: AMCG00005176


Basic Information

Item Value
RNA id AMCG00005176
length 1085
RNA type mRNA
GC content 0.39
exon number 4
gene id AMCG00005176
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17694183 ~ 17699719 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

AGGAAAGTTATGTGGACATCCTGGGGACACATTAAATGGTcagtttaatttagaacaagggaaagACTTTGTGTTTGGAGCAGAAGTGAAATATGACTGCAATGAAGGTGGTGAAGTGCATGCCTGAACAAACAGGAGATAATATCATTGTTACTGGGATGCCAGAAAATGTTGATCATCTTCCATATGGAAGTGCTTTGCAGTTTGAATGCACCTCCTCAAATCATCATAAACTGAAGGGCAACTCAGAAATCTATTGCACATCAAATGGGACATGGAGCAGCCCGTTTCCTACATGTGAGGgACTCATCTATGTGTGTGGATCAGCACCAAGAGTTGAAGGTGCAATTATTGTAACAAGGCCACAGGACAGCTACAGTGATGGTGAAAGCATTCAATATGCATGCACAAGACATTATGTACTTGAAGGACAAGCAGTTGTTAGATGTaGCCGTGTGTTGTGACAGCGGAAGAAATGCTGAAAAGAAATATTCGATTTAGGTGGCCAAAACCGACCACCAACCTACCAATGTACGTTCCACATAAAGACTAttgtgaatttgtgtgtgttcgAGGTACAAACACAAGAGATCGTCTTAGATTACAGTGTAAAGACAGTTATTTTAATACCCCTACTtgtaaaggggggggggggggagaaagtgGGGCATCACAATAATGACCTAATTCAATAGTAGGAAGATGATTCAATTTGAACTAGTTTGGAAGGTCATCAGGTGTTGTGGTTCAAACCAAACAACAACCATGTTTGTACAAATTTCACCTGCAATCATCTACAGCCAATCAACATATGaagttatatacattttaccaCTATTTGGCACCAACTGTTCAAATTTCTGCATTCGTGATACTAAGACTTTCATAAACTTTCCATGATCAAAATGCATGAAGCTTTGCAAATCGAACAACCATgcttattaatataaaaataaatcatacatctGCTCACCAAAAAATATCCTGTATGCatcttcacaaacacacacatcccgGAAAGGAAGTCAATGCAGATTCAATTCTGGgtcattaattatttgaacaaaaaattaagagatcactTG

Function

GO:

id name namespace
GO:0030168 platelet activation biological_process
GO:0007596 blood coagulation biological_process
GO:0050817 coagulation biological_process

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183496 lncRNA downstream 147851 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 729109 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1318766 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1715328 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 2159038 15503271 ~ 15535145 (-) False AMCG00005111
TU183641 lncRNA upstream 325046 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 598128 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 652148 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 1042165 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1384276 19083995 ~ 19086041 (-) True G146189
AMCG00005168 mRNA downstream 27577 17636696 ~ 17666606 (-) True AMCG00005168
AMCG00005158 mRNA downstream 148033 17543146 ~ 17546150 (-) False AMCG00005158
AMCG00005157 mRNA downstream 163696 17522613 ~ 17530487 (-) True AMCG00005157
AMCG00005159 mRNA downstream 202797 17474522 ~ 17491386 (-) True AMCG00005159
AMCG00005156 mRNA downstream 260528 17401569 ~ 17433655 (-) True AMCG00005156
AMCG00005175 mRNA upstream 7999 17707718 ~ 17735224 (-) True AMCG00005175
AMCG00005177 mRNA upstream 35589 17735308 ~ 17744787 (-) True AMCG00005177
AMCG00005174 mRNA upstream 61701 17761420 ~ 17775426 (-) True AMCG00005174
AMCG00005170 mRNA upstream 272635 17972354 ~ 17975649 (-) True AMCG00005170
AMCG00005171 mRNA upstream 282620 17982339 ~ 17983368 (-) True AMCG00005171
TU182803 other downstream 2726560 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4357437 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5537805 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5537805 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8787589 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1314828 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 1870340 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2058513 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2320991 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2320991 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile