RNA id: AMCG00005177


Basic Information

Item Value
RNA id AMCG00005177
length 594
RNA type mRNA
GC content 0.40
exon number 3
gene id AMCG00005177
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 17735308 ~ 17744787 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTGACATGTCAAAAACCATCTACAGAAGATTTTGGATATCCTAGCAAGAACATATATAAAGTTGGAGAAACAGCCGTGTTATTGTGTCCTCGTGGATTTAGGACTGTAACTTATGAGCAGAGCACTACTCTCACCTGCACAGAAAACCAGACTGTGAATGAAGGCTGGTCAATCCGCCCTTATTGTGAACAAATTATCTGTGATCCTCCAGATATTCCAAATGCCAACATATCAAATCCAAAGAATATTTACAAGTTCAAAGAGCATCTTCATTATCAATGTGACAGAGGATTTATTCCAGCTTCAAGTGAGGTTGTGTGTCAAGCATATGGGTGGGACAAAGTTCCCTCTTGCAGAGGCAAGTCTCAAATTCAAGAAGGGATGTGTAAGAAACCTGATCTACGTAATGGATTTTGGAAACCAGAGAAGGTGGTTTATGACAAAGAAGAAACTGTATATTATGCTTGTATTCCTGGATATAAACCTGTAACAGGAGGGTGGTGGGGAACTCTAACATGTTCCAATGGCGCGTGGTCCGAGACTCCAGAATGCATTTGTAAGACATTGATGAATTTTCTTATGAACAATATACCA

Function

GO: NA

KEGG:

id description
ko04610 Complement and coagulation cascades
ko05150 Staphylococcus aureus infection
ko05322 Systemic lupus erythematosus
ko05020 Prion disease

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183496 lncRNA downstream 188976 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 770234 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1359891 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 1756453 15958851 ~ 15978855 (-) True AMCG00005114
TU183044 lncRNA downstream 2200163 15503271 ~ 15535145 (-) False AMCG00005111
TU183641 lncRNA upstream 279978 18024765 ~ 18025674 (-) True G145995
TU183674 lncRNA upstream 553060 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 607080 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 997097 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1339208 19083995 ~ 19086041 (-) True G146189
AMCG00005175 mRNA downstream 84 17707718 ~ 17735224 (-) True AMCG00005175
AMCG00005176 mRNA downstream 35589 17694183 ~ 17699719 (-) True AMCG00005176
AMCG00005168 mRNA downstream 68702 17636696 ~ 17666606 (-) True AMCG00005168
AMCG00005158 mRNA downstream 189158 17543146 ~ 17546150 (-) False AMCG00005158
AMCG00005157 mRNA downstream 204821 17522613 ~ 17530487 (-) True AMCG00005157
AMCG00005174 mRNA upstream 16633 17761420 ~ 17775426 (-) True AMCG00005174
AMCG00005170 mRNA upstream 227567 17972354 ~ 17975649 (-) True AMCG00005170
AMCG00005171 mRNA upstream 237552 17982339 ~ 17983368 (-) True AMCG00005171
AMCG00005185 mRNA upstream 266741 18011528 ~ 18022231 (-) True AMCG00005185
AMCG00005184 mRNA upstream 283456 18028243 ~ 18036344 (-) True AMCG00005184
TU182803 other downstream 2767685 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4398562 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5578930 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5578930 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 8828714 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 1269760 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 1825272 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 2013445 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 2275923 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 2275923 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile