RNA id: AMCG00005186


Basic Information

Item Value
RNA id AMCG00005186
length 1731
RNA type mRNA
GC content 0.38
exon number 4
gene id AMCG00005186
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18070432 ~ 18073923 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GTCTGCTAAGGTGTGTTAAAATCTGTGTGGTTGAGGGCTGGGATATTTATTCACATACAGTGGCAGTGCGTCTTTGGATTTAAATCCTCCAGCTGTTTAACGATGCCCAagttattttcttctaaatCACGATTCTACGACTTGGAAGACAAAGAagagaagcaaataaaaaaGTTTGTGACTGAAGAGCCAACTCTAGAGAAAGTTCTGAGTGAAAAATgtTTCATTGATGCATTCAGAGCGTTCCTCCGGTCCGAGTTCAGCGATGAGAACATCGAGTTCTGGTTGGCCTGTCAGGACTACAAGGAAGCCAGGTCACCGACAGAGCTCTCCTCAAAAGCAAAAGAGATTTACAATGAATTTGTGGATCCGCACGCTCTGAAGGAGATTAACATTGACTGTCACATCAGAGAGACGATCGAAATGGCCCTGCAAGAGCCCGATTTCTCGTGCTTCGATGAGGCtcagaaacacatttacagtgtCATGGAGAAAGACTCGTGGCCGAGGTTCCTGAAATCTGATGTCTATCTGAACCTTGTGCATAAATCCCAGACGGAGGACGGCAATAAGAAAGGGCAAGAGTATTGGTGGCACGATGCATAGGCCAAGAAAACCAAAGCTGTGGCTTCAACTCTCTCCATAAGTCATGCATGATTGCCCGTGGATGGCatggaaaaaaaaggcaatggAGTTCCTTAAGTACAACACACTCGCATACAGGAAGAAGGAGTGAATATGTCAGAGACTGAAGGATATTACTAATGTCtcattgtgtctgtctgtctatgtatactgtatatatatatatatatatgtagcatATTTCCAGTATATATTTCTCATACCACTgagatgcattttttaaacaaaatacaaatatttttcgTTCCAAGCcttgcatttctgtttctgtaattCCGTGTCACTTGGAATTCTCAGGGACCTTCTAggaaattgtgtcaaataaggtataataataaaacgcaaggtaaacattttacagatttatagttttttttcctgaaatgtcCTATTTGTTTAGTGCTGCAAGATAAGATAATAGGTCATTTGAGTGTCTCGAGTGTCTTAAATCACTCGCGTCAGTCCGATTGGCTAAAGCAGTCAGGACATTGTATACGTCACAGGTAGGAAAAGTCAAAGGATTACAGATGGCAGCACAATCGCACTCTGTAAGAGTTTGTGTAAATCCTCCCAGTGGCAAAAAATAGCTCAGCAAAGactataaaataaaccatgccTATCTTTGCTATAACAAGAAACAAGAGAAAAGGGCCAAAATTTCTGACCATCAAAGAAAAAAGTCAGCTTTGTTAAGTTTATAAAATAAGGTCTGAACAACATTTATATAAGCATACTAAACCCCTTGGTTATGAATAGGATCCGTATATGGTGCATAATCAAgtgttatataattattaataacaactGTACAATTGTGTTACTCTACCACACAAGAGAACATACTCTGACAATTTGTGTAACAgacaaattgaaatgcatgtaaTTTCATTGTGTAACAACATTTAACTCTTCATACATTTGACATTAAACACTTTGgtcactttttttcctttaactttTCTCCTTCCATAAAGTGAAGTTTTTACAAGCTGTGCTTcgaaaataaaatcataaaagctGTCTTTGCCTTTCAGTGTtaatacaaacaacacaaaggttGTGTGTGAACCTTATCAATTAATTTCC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183641 lncRNA downstream 44758 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 524100 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 1105358 16964203 ~ 16965074 (-) True G145760
TU183239 lncRNA downstream 1695015 16374662 ~ 16375417 (-) True G145680
TU183125 lncRNA downstream 2091577 15958851 ~ 15978855 (-) True AMCG00005114
TU183674 lncRNA upstream 223924 18297847 ~ 18298103 (-) True G146022
TU183675 lncRNA upstream 277944 18351867 ~ 18352132 (-) True G146023
TU183766 lncRNA upstream 667961 18741884 ~ 18753533 (-) False AMCG00005207
TU183906 lncRNA upstream 1010072 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 1144468 19218391 ~ 19219758 (-) True G146227
AMCG00005187 mRNA downstream 4064 18063829 ~ 18066368 (-) True AMCG00005187
AMCG00005183 mRNA downstream 21188 18046691 ~ 18049244 (-) True AMCG00005183
AMCG00005184 mRNA downstream 34088 18028243 ~ 18036344 (-) True AMCG00005184
AMCG00005185 mRNA downstream 48201 18011528 ~ 18022231 (-) True AMCG00005185
AMCG00005171 mRNA downstream 87064 17982339 ~ 17983368 (-) True AMCG00005171
AMCG00005179 mRNA upstream 13482 18087405 ~ 18089115 (-) True AMCG00005179
AMCG00005178 mRNA upstream 29335 18103258 ~ 18109453 (-) True AMCG00005178
AMCG00005193 mRNA upstream 468628 18542551 ~ 18545413 (-) True AMCG00005193
AMCG00005196 mRNA upstream 605143 18679066 ~ 18684796 (-) True AMCG00005196
AMCG00005209 mRNA upstream 660037 18733960 ~ 18738143 (-) True AMCG00005209
TU182803 other downstream 3102809 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 4733686 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 5914054 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 5914054 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9163838 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 940624 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 1496136 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 1684309 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1946787 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1946787 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00031847 True 1279 mRNA 0.42 5 NC_007113.7 6475567 ~ 6482240 (-)