RNA id: AMCG00005197



Basic Information


Item Value
RNA id AMCG00005197
length 975
RNA type mRNA
GC content 0.55
exon number 2
gene id AMCG00005197
representative True

Chromosome Information


Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18824891 ~ 18826492 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence


ATGCTGGGAGAGCAGCCGCAGGGAGACCAGGAAACCAGGAGACCAGGAGACCAGCTGACCAGCTTCTTCATCACGAGGGACAGGAGACTTCTTGCGTCCGAAGCCACGATGAGAGCCGTGATCTTGCCCGTGCTGCTGCTCTTGGCGCTGTCCGCCATCGCCCAGGTCCAGGGGGAGGTGAAGGTGGTCAAACTGTGCGGCCGGGAGTTCATCAGGGCCGTCATCTACACCTGTGGAGGCTCCCGGTGGAGGAGAGTGCCGAGCGAGCGAGAACTGGCCGGTGAGTCCGTcgctggagggagggagggaagggaggagagggaggagagggaggagagggaggtggaAGGAAGCCCTgGCCCGGACGGCGAGGATGTGGACTCTCAGGAGGTCCCCCCCTACAGAGCGCCGGACGAGCCGGACCGAACCCTGCAGGCCCGGCGGGACCTGAACCAGCTCCTGACCACCGCCTGCTGCCAGTGGGGCTGCAACAAGAAGGACCTGAGCACGCTGTGTTGAGGGAGAGGCGTTCATCTCCACCGAGAAAGACTTGCACTGATCCCACCGACACGCAAAACCCAACACAGAGAAACGCCGTGAGAATTTTGCTTTGAAACGAAcctaatttaaaacacacaaaccctCTCGAATCTAACTCAACTGTTCATTCTAGTCATGCTGCAGTATTTTCTTCACATGCATTGTATTTATGCTTTCAGCGCAGGTATATACGCTCCAATGAAAGCTCAACTGTTTACTTCTCAGAAAGCCAGCCCACTCCCGGACGAAGCGGCGTGTTTTCTTATGTACAGGACAGATTGTATTCCACACCACAAAGTTCCGTTTCCAGTTTAGGAACTCGAATTGTAACAATCAGGGAATTTGATTGGGAAAAGCCTCCCCGCAGTGTGAATGATCTGAATGTCTTGTATTTTCCGATGTTTGCCTAATAAATACTATTGCATAACCTCAACA

Function


GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU183799 lncRNA upstream 3249 18820357 ~ 18821642 (+) False AMCG00005199
TU183759 lncRNA upstream 60593 18764043 ~ 18764298 (+) True G146091
TU183758 lncRNA upstream 67020 18757667 ~ 18757871 (+) True G146090
TU183756 lncRNA upstream 68296 18756075 ~ 18756595 (+) True G146088
TU183698 lncRNA upstream 282051 18541256 ~ 18542840 (+) True G146043
TU183835 lncRNA downstream 66575 18893067 ~ 18896727 (+) True G146140
TU183880 lncRNA downstream 222056 19048548 ~ 19053126 (+) True G146172
TU183905 lncRNA downstream 257527 19084019 ~ 19084317 (+) True G146188
TU183921 lncRNA downstream 291039 19117531 ~ 19195204 (+) True G146202
TU183944 lncRNA downstream 391939 19218431 ~ 19219345 (+) True G146222
AMCG00005199 mRNA upstream 3468 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005198 mRNA upstream 18401 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005203 mRNA upstream 71301 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005204 mRNA upstream 90963 18728705 ~ 18733928 (+) True AMCG00005204
AMCG00005205 mRNA upstream 98676 18713405 ~ 18726215 (+) True AMCG00005205
AMCG00005217 mRNA downstream 265735 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005232 mRNA downstream 648793 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 725971 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005239 mRNA downstream 874971 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 882844 19709336 ~ 19711528 (+) True AMCG00005237
TU183561 other upstream 1053366 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3440279 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6043721 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7161523 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11093891 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 753081 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1355862 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1447021 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1695157 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1835434 20661926 ~ 20670169 (+) True G146596

Expression Profile