RNA id: AMCG00005198


Basic Information

Item Value
RNA id AMCG00005198
length 4418
RNA type mRNA
GC content 0.42
exon number 10
gene id AMCG00005198
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18793732 ~ 18806490 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GCTGGGCAAGTATGGCGGAAGTGCAGAGACGTCAGCCTGTGCGGGTTAAAGGAGCGGCGGCCTCCGAGAGCGGCTCACACCGGAATGAGGCCGCGGGGATGGCGCCCGAACCGTTCACGGTGTTCCTGAAGCTGTCCGCCGCCGTGTTTTACGGGCTGGCCTCGTTTCTCATCGTGGTGGTCAATAAAAGCGTGCTGACGAACTACAGgttCCCGTCTTCATTATCCGTCGGGATTGGACAAaTGTTGGCAACAGTAGTAGTTCTGTGGGTGGCaaaggcattcagggtaatcaAATTCCCTGATTTTGATAAAAATATACCTCGCAAGACTTTTCCTCTACCTCTCCTGTATGTGGGAAATCAAATAACGGGACTGTTCGGAACAAAGCAGCTAAATCTGCCCATGTTCACGGTCCTGAGACGGTTCTCCATTCTCTTCACCATGATGGCCGAGGGATTCTTGTTAAAgAAGAAGTTCTCTCGGCCCATCCAGCTCACGGTGCTGGCGATGATCCTTGGAGCTTTTGTAGCTGCCAGCACTGATCTGTCCTTCGACCTCCAAGGGTACGTGTTCATCCTGATGAACGATGTCTTGACGGCGGCGAACGGCGCGTACGTCAAGCAGAAACTGGACTCGAAGGCAAGGGAGCTGGGGAAGTACGGCCTGCTCTactataatgcattatttatgatCTTCCCGACTCTGTTGTTTGCTTATTTCACTGGGGATATCCAGATGaataTTTTGATAACCTATATCGGGATGGTGTTTGGTGGAGACTACATCTTCACCTGGACTAACTTCATTGGATTAAACATAAGTATTGCGGGGAGCCTGGTGTACTCCTACATCACGTTCACAGAAGAACAATCAAGTAAGCAAAGCGAAAGCGCCAGCAAACTGGAAATCAAAGGGAAAATCGCCGTATGACATTAAGCCAACGCTTCTAATTGTCGTGTAATTGAACTGCTTAATTTATTTGGAACAAACGACACGCGtatgaacaagaacaaaaccaaaccgCGCCGCGGCAGCTGGGAGTGCGTCGTTCTCCTGCACAAACTCACTAATGAGCTGCTCTGCGCAAGGAGGAGGGTATTAAAAAGAGTGATGTTTACGCAGTTCAGTGGACGACCCCCCCCCAAAATGCCAAGCCCCTCTGGCCAGAAGtctgtgttaaattgtgttGATATTGTTTTGGGGGTTTCTTTACGGTTTAAAGAGGTCTGTTTACATTGGGACCAGTCTGCCGGCATTGGGGGCAAGAGCTAGTCCGTTCTTTGGGAAATGTCTTGTTTATATGAACACCTGTGGGAGGAACAAGTGACCTAACTGCTGGATGTTTCTGGAGTCATTGTGGGGAAACGTAATCTCTCCAATCAActaacatctctctctctctctcatctgtcaTCCTGGTGgaatcaaattattttctcttcccttTTCGATAATCTTGAAGCAGCAAGTTTTATAACGGTCATAAAAGACCTTTTTTAACTGTTAATCATGCATACGGTTGTGTGTGCATCACAACCGACATTCACCTTTGAACGCACAATGTAATAAATGCACAACAACGACAACATGCTAATCATTTACCGCTATTAATCACCGGTTCGATCTTTATAACCATTTTTCCAAATTATGCTTAATTACATAACGAGGAATCCTCGAtctgcatttaatgtattaatctttttttatagatgttttaaaatacgGTTTCATTTGGCCGTGCACCTCTGATGTCATAGGGTCTTATAATCTGATAATTtaagattgtattttatattataatctgGTATTGGAGACTTCCTTGTCCTTGTGTTggaatttgtattcattaagtGAAAAGGCTCACTGTGTGGGACATCTTGGTGCAAAGGCTGAAGTGGAACCTTGTTTTTGTGTCATTGTAGTTCACTGCGGTCTGCAATGACCTAAACCATTAAGTGCACTTTTAACTGTTTacaattaagtgtttttaaagtaaCGCGTGGACCGGCTGGCCAGCCAGGTGTAACTCTCCTCATCTCGAATCTTTTATTCCAACAGAATCGCAGTAATGGGGAGCGCCACCTTGTGGGCGATATTGAAATGCCAGCCCCTGTTCAtgacgttttttatttttaaatattaaaaaccatattaaaagtccggtgtgttttttttaggaAGTGCTCAaaggtaattgttttttttattcatctcCCCCATTCAGTCTTTTTTCTGTCCGATCTTGTAAATAAAACTTGCTCCTTCCTGTTATCTGGATCAACAGGCTCAGCTCTATTGGTCTCCTCTGGGTAAATTGAAAACGATTCAAACCAATAGTTTTCCTGCCCAGAGGTGGTGTGGGTTTGAGCCGAGCGATGCTGTCAATCTCAGGGCCCTGGAGTTTCGGCTTCTGTGGGGAAGCTGtgggaaacatttaatttttaatttaacccaGACTGTCCATGtgaattgtctttttaatttgtttccccaTTTCCAATCACCATTGCACTTTCAATTGGTCTTTTCAGAGTATTATTTTACACTGCGTCTCAAATACAagtgtttttgtggttttcactGTTACATTGTATACTGCCTGGAGTTCTGCTCCCTATGTCCTCAAATCATGGCTCGTTTTCTACAGTGCGGTGGAAGATATTAAGGTGTGGTTTTCTTCAGATCATTGAAAGAAAACCATTTACGTTAGTGATTGGCTGTCTGAGGACAACTGAgttttgtgtgttggttttatttccttatttttaagGAAGAAACAAATAAGATCGAGCTCTCTGTATTTGCCATTCCccaaatatttatacatgcatatCTATGTCCTTAAGTGTGTTGTTTGTCATCCCCCCACCCCGCAGGGAAAGCCATGTGTTAGAGATTTGCAACCTTGTGTTCCCTGCCTCAATTTCAGGGTGTAATTGAAATAATGGCCCAAATAAGAACCGAATGCTTTCAATTACATGAGCAGGAACGGGGTCTTGTCATGTTCGTATTTAATAGAGGGGAAGGAGGACAAGGTTAAGagcattgtgttttaaatgcgTGCATCTGATCTCTGAACACAGCAGATGTAAATATACACTCAAGTGCCTATTTTTAGTTGTAGTTTCTGTCACTAAACTGGGGGGCTAATCTGGTAAAGGATCAACACCGTTCCTGCAGTTCTTCGTGGaaagaacattttacatttactctAAACTTGAGTATACTAAGTAACGAGAATGTAGGTTTACCTGTATTCGGCTTTATAAGAGTTGCCCTTATTCTAAAGAGGTGTATGAACCTTTTCTTTGCCATCTTTCTATCAGAGGATTCGTGTAATCCGTGcagcagaataaaaaatacactaattaaatctgtatatattttggaGGCTTTTCTCAAGAGAACCAAGAGTCGTGGGAAGTGACCTTGACCCCTCTAGTCTAGACGTGACAATTAAGGAAAATATGCATCCTcctaattgtaaataataataataataataataataatattgttgaaGGGAATGACATCGCAAAGCGATCCCAATCTAAAGTGTTGGGTCTGGGACAAGGTCAACAATGTGGTGGATTTGATTGATCTGTAGGAGCCCTTTATGCGTGGATTTCCCTCCCAGTGTGTGTTATTGCAAAGAatgttgttgatgttgaatcatttttaaattgtcagatttaaatggaaatgataCACTTGTTGGAGAAAGTCTTTTGTGAGGAGTTTGTTTATAAACTGAGGGTAAAATCCTATATTCAGTTAGGAATGCCAACGTGAAAGAGTCTAGCCAAGCTCAAGTCTGTATTCCTGCTCCCCCTGCATTCGCACGGCAACGTCAGGCTTTGACTTGGTGCCTCGGAAAGTTAGTTTAGTTTGGTCTTTTAATCCACGTGTTACTTTTTAGATTCAGGTTTcctccttttaaaatgtggcGTTTAACACCaagcatgtataaataaatcgAAACGGAAGCAACCCTGCCCAGGCCTGAAGTGACTTCTACACACTTTTCAATCCACAAACCCGACGGCTGGTTTCCATTGGGTGGAAAGAGAGCTCGGGGGGTTGGAGCTTGAAAGCACAAAAATAGTTTTCCATTGTGAACATGAAGGGCTGCTTTCGCACCCAGATTAGCAGCAGTCGATGTTATTTCAGGTAGAGGCCGGCGCTAATGCAGGGCTGTGGGAAAGCAGTCGTGAATGTATGCACTTTACAGAGTGAAACACTTATATACTGTTGTATATGTCAGCTAACATTGTACAGTGGAGACAGGACTCTGTATTATACAAGACTTGTTACAGAGGAACGCTTGCCCAGAGACCTTGAGCAAATGTTTGTTCTCCTGCAaagtgactttttatttttctgtgaagGATGTGAAATAAAGATATCTATTCAACA

Function

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG:

id description
K15281 SLC35D; solute carrier family 35

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183759 lncRNA upstream 29434 18764043 ~ 18764298 (+) True G146091
TU183758 lncRNA upstream 35861 18757667 ~ 18757871 (+) True G146090
TU183756 lncRNA upstream 37137 18756075 ~ 18756595 (+) True G146088
TU183698 lncRNA upstream 250892 18541256 ~ 18542840 (+) True G146043
TU183673 lncRNA upstream 495629 18297874 ~ 18298103 (+) True G146021
TU183799 lncRNA downstream 13867 18820357 ~ 18821642 (+) False AMCG00005199
TU183835 lncRNA downstream 86577 18893067 ~ 18896727 (+) True G146140
TU183880 lncRNA downstream 242058 19048548 ~ 19053126 (+) True G146172
TU183905 lncRNA downstream 277529 19084019 ~ 19084317 (+) True G146188
TU183921 lncRNA downstream 311041 19117531 ~ 19195204 (+) True G146202
AMCG00005203 mRNA upstream 40142 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005204 mRNA upstream 59804 18728705 ~ 18733928 (+) True AMCG00005204
AMCG00005205 mRNA upstream 67517 18713405 ~ 18726215 (+) True AMCG00005205
AMCG00005206 mRNA upstream 98026 18684208 ~ 18695706 (+) True AMCG00005206
AMCG00005195 mRNA upstream 129467 18645445 ~ 18664265 (+) True AMCG00005195
AMCG00005199 mRNA downstream 8539 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005197 mRNA downstream 18401 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005217 mRNA downstream 285737 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005232 mRNA downstream 668795 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 745973 19552463 ~ 19564086 (+) True AMCG00005231
TU183561 other upstream 1022207 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3409120 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6012562 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7130364 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11062732 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 773083 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1375864 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1467023 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1715159 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1855436 20661926 ~ 20670169 (+) True G146596

Expression Profile