RNA id: AMCG00005199


Basic Information

Item Value
RNA id AMCG00005199
length 2166
RNA type mRNA
GC content 0.59
exon number 16
gene id AMCG00005199
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18815029 ~ 18821642 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

atgtctACTAGCCCTGGGAAGTTTAAGAAGCCGACTATAAAAGTGACCACGCTGACCATCAACCCCAGAGCGCCGAATGTATCCGGCTCGGCCATGAACAGACTGACCCACAGCACCGTGTACCGCAGCACCACGGGCTCCATCAGCCGCAGAAGCCCGGGCGCCGTCCAGCCGAGGCTGAGCAAGATGTTCGTGGCGTATGACCTGTCGGCCAGCGCGACCTCTGACCTCTTCTCCACCAAGTCTGTGTACCAAACCGGCGCCGACGCCAGCTACACCGCGCCATTCTCGAGGTCAGTTGCCGGAAGCAGCACAGTTTCTAGGTCAATGCGGTCAACTATGGAGTCAATGGGCGAGGAAATTGAGTATCAGAGCGCAAGACGTGATACTTCCACGAGCCTCTCAGGTGTGCAGTTGAGACGGGAGGAGGTGCGGGAGCAGATCACGGAAGACATGTTGGATGATGTCGTGGATCGGTATCTGACCGAAACGGAGACCCTGTGGCTGCTGGACATGCCTGCGGTCACAGTGTCAGTGAACTCCGAAGAAGCCGCAGCGATCAAAGAGAGAAACGACAGATACGCGGAGCTGTGCAGAAACAGGGCAGGGAACGACCAGTATGTCGAGAGGACAATGCAGACCTTTAACGGGGCGCCCAAAACAAAGGAGGTCCAGTGTGAGAAGGTCTACATGGCCGATGCAGCTGTGATGGCCACCACCTGGGACATGTACGATACTTTCCAAGACATCGCTGCAGAGGCGGAGCCGATGTCCGAAGCAGGGCGGTCGAGTCGTCCCGAAAGCGCTTTGAGCCACAGGGTGGACGCCAGCAGGGCTGCTGATGGAGCCATGTCCATCATAAGCGCAGCTTGTTCAACCAGCCGCTCGAGCTCGGGAAGGTCCATGGAGCCCGATGCTTTGCCGCAGACGCCCACAGCGCCAGACCCGGCGGTGATCCTCCTGTCTAAGAAATTCCAGCAGGATCTGATTGTTATGGAGAGGATTCTGATGCAGAACATCTTCCAACCCAAGCTGGCCGCCTACAGACAACTGCCCATCCTTACAGGAAGCGAAGAGGTGGTTAAAGAAGAAACGAAAGGCGAAGGGTCTTCTGAGAAGGCTGTGGTGCCAGCCCTGGAGCGCCTGTGGTCCTTCTCGTGTGAGTTGACGAAGGGGCACAACGTGAGCAGCATGGCCTGGAACAAGAAAAATGTGGATCTCCTGGCTGTGGGGTACGGACAGTTTGATTTTAAGGACCAGAAATCCGGCCTGGTCTGTTGTTGGTCGCTGAAGAACCCCATGTGGCCAGAGAGAATCTTCCACTGCGAAAGCGGGGTGACGGCCGTGGACTTCTCTGCCAACAACGCAAACTTCCTGGCCGTGGGGATGCACGACGGGGGAATAGCCATCTACAACGTGCAGGGCGAGGAGAAGAGTCCCGTCATAGACAGCAGCCCGGTGTGGCAGCTGCGGTGGGTCGAGGACAGGGGGCCGTCGGGGGAGGACAAGGGGGAGACACTGGTCTCGGTGTCCGCGGACGGCAGGATTAGCAAGTGGTACCTCAGGAAAGGCCTGGACTGCATGGAAACTCGTGTTCTGGGGGTCGTCTGCTTgacttcttcctcttcctcgcAGGACACAAACATCTACCTGGCCGGAACAGAGGAAGGTCACATTCATAAGTGCTCTTGCTCGTATAACGAACAGTATCTGGAGACGTACCAAGCGCACAAGGGCCCGCTCTACAGGGTCACGTGGTCCCCGTTCTGCCCGGACGTGTTCCTGAGCTGCTCGGCCGACTGGACCGTCCAGCTCTGGAAGCAAGAGCTGGCCACGCCCGTGCTGGGCTTCTCCTCCACCCACAGGGCCGTGTTCGACATCGCCTGGTCCCCGAAATCAGCCACGGTGTTCGCGGCAGTGAACGAAGGACGGGTGGAGATCTGGGACCTGGGGGCCAGCATCCTGGACCCCACGGTGGTGAGCCCGGCCAGCCCGGGGGCGACGCTGACCTCCCTACTCTTCGCCTGCCGGACGGACTGCATCCTCATCGGGGACAGCAGCGGGCAGGTGGTTGTGTACGAGCTGAAGGACCTGCCCGGTCGAGATGCCACCCAGGGGAGCGCTCTGTACGACATCATCGCCTCGACCCTGGCCAGCCAGCTGTGA

Function

GO: NA

KEGG:

id description
K24723 DNAI4, WDR78; dynein intermediate chain 4, axonemal

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183759 lncRNA upstream 50731 18764043 ~ 18764298 (+) True G146091
TU183758 lncRNA upstream 57158 18757667 ~ 18757871 (+) True G146090
TU183756 lncRNA upstream 58434 18756075 ~ 18756595 (+) True G146088
TU183698 lncRNA upstream 272189 18541256 ~ 18542840 (+) True G146043
TU183673 lncRNA upstream 516926 18297874 ~ 18298103 (+) True G146021
TU183835 lncRNA downstream 71644 18893067 ~ 18896727 (+) True G146140
TU183880 lncRNA downstream 227125 19048548 ~ 19053126 (+) True G146172
TU183905 lncRNA downstream 262596 19084019 ~ 19084317 (+) True G146188
TU183921 lncRNA downstream 296108 19117531 ~ 19195204 (+) True G146202
TU183944 lncRNA downstream 397008 19218431 ~ 19219345 (+) True G146222
AMCG00005198 mRNA upstream 8539 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005203 mRNA upstream 61439 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005204 mRNA upstream 81101 18728705 ~ 18733928 (+) True AMCG00005204
AMCG00005205 mRNA upstream 88814 18713405 ~ 18726215 (+) True AMCG00005205
AMCG00005206 mRNA upstream 119323 18684208 ~ 18695706 (+) True AMCG00005206
AMCG00005197 mRNA downstream 3468 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005217 mRNA downstream 270804 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005232 mRNA downstream 653862 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005231 mRNA downstream 731040 19552463 ~ 19564086 (+) True AMCG00005231
AMCG00005239 mRNA downstream 880040 19701463 ~ 19704317 (+) True AMCG00005239
TU183561 other upstream 1043504 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3430417 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6033859 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7151661 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11084029 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 758150 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1360931 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1452090 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1700226 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1840503 20661926 ~ 20670169 (+) True G146596

Expression Profile