RNA id: AMCG00005200


Basic Information

Item Value
RNA id AMCG00005200
length 1668
RNA type mRNA
GC content 0.48
exon number 5
gene id AMCG00005200
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18826986 ~ 18830395 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGACAAGCATCACATGTGTAGTGTGAGAACTGTATGTGACGTTAGTGGCTAACCGAACGGAATAATAGtagaagtaataataaaacaataagaaaatatcTTGCAAAGGGAAAAATACTTGGCACACGTATTTGAAAGCGAGGGGCTGTTTTCTAATGGTTGCCTTGTGAGCTATACAAAAAACGTGATCTTGTTTTGTATCGTTTACAGTGCCAGTGATCGAGAGTGTCTCTGGTCGCATTCAGCTGCAGATTCCCGTTCTTTCTTCCTGCATTGCTAACCGTGCTGTCTGTACAAACTGCATCCGTCCATCGCAGACGCACGGATCCGCCAATGGCAGCGCCGGGATTGTGCACATGTGCGCAGGTCTGCGGACGCACTGCAAGCTGGCACTGCGCCTGCGCCCGTGTTGACGGCAACACACAGGTTGGCAGGCCAACCGACGCGCCGCTGCGGGCTGTTTGCGGTGCAACTCGGAGCGGAGAGACCCGCACACCTGCGCCCCTCGGAGCGGAGAGACCCGCACACCTGCGACACACCTGCGCCCCTCGGAGCGGTAAGACCCGCAAACCTGCGCTCGTACTGTGCGCACCTCGGACAGGTCCAGCGATGTCAGACGTGGCGAAAGACAAAGCCGCTCGCCTGCTGAAGAAGAGAGGCAGCTTCTCCTCCCTGAGCAGCCATGAGGTCAAGGCCAAGGAGACCGCGGGCAGAACCAAAGACTCCGTGAGCACGGTGTCTTACATAGACGAGCCCGGCCACCACGATGACGCCCCCAGACCCGCGGTGCAGATGGAGAACACGTTCCAGACAGCCCCTGCTAAGAGGTTTCCAGTCGCCACCGTCAACAACATCTTAAAGGATGTGCTGACAAGTTATCTACAGGAAGAGAGGTACGAGGCCGAGCTCTGCAGACAGATGACCAAGACGATATCCGAGGTCATAAAAGCCAGAGTGAAAGACTTAATGATTCCGCGATACAAGATCATTGTCCTCATCAGCATCGGGCAGCTGAACGAGCAGAACATGCGCGTCGGCAGCCGCTGTCTCTGGGACCCCACGAACGACACCTTCTCCTCCTACTCCTTCAGAAACGACTCCTTGTTCGCTGTGGCAAACGTCTACGCCGTCTACTTTGAGTAGAACGACGGCCAGACAACTCGCCGTCATTGTGAACGACTCTGATTGATGGTTCTATGTATATGATACTGTGAGAAGAACTGGGGTAATCATGTGCACACCTGATCAAAAATACATCTATATTGTTCGTCCAATAAACAACTCACACTTACACCTCCTGGTTAAAGGCTTATGAAATATTATCCTGTCTAAAAAATTTTAGAATATTATTGCTTCCATCGTTATAATTGCTTCAATCCAATCAATCCAGCTTGTACAACTTGTAAATTGTGAGTTCAGAATCAATGTTGCACATAAactgtctgtgttttcatgcttgtgctgctgcttttgtttttaagatttctAAGCTACATTTGTGTATCAGGTTTGAAAGATCTGCAACACGTTTGACCTGTTTTATTCAGCGAGTGTTGCCATAAAAGCTTGTGCGTTGTCAATGAAGATATATTtactaattaatcaattaaaaacaagatttaaatgATAACGttgatatataatgtataataaatacatttctgaaaa

Function

GO: NA

KEGG:

id description

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 73453 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 474854 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 528883 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 801312 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1280654 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 253600 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 387996 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 388029 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 633612 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 780371 19610766 ~ 19611005 (-) True G146315
AMCG00005202 mRNA downstream 13651 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005208 mRNA downstream 45421 18775468 ~ 18781565 (-) True AMCG00005208
AMCG00005207 mRNA downstream 62688 18749858 ~ 18764298 (-) True AMCG00005207
AMCG00005209 mRNA downstream 88843 18733960 ~ 18738143 (-) True AMCG00005209
AMCG00005196 mRNA downstream 142190 18679066 ~ 18684796 (-) True AMCG00005196
AMCG00005201 mRNA upstream 1562 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005210 mRNA upstream 62686 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005211 mRNA upstream 80766 18911161 ~ 18972862 (-) True AMCG00005211
AMCG00005216 mRNA upstream 148240 18978635 ~ 18982040 (-) True AMCG00005216
AMCG00005214 mRNA upstream 182682 19013077 ~ 19024461 (-) True AMCG00005214
TU182803 other downstream 3859363 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5490240 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6670608 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6670608 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9920392 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 184152 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 739664 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 927837 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1190315 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1190315 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile