RNA id: AMCG00005204


Basic Information

Item Value
RNA id AMCG00005204
length 2538
RNA type mRNA
GC content 0.44
exon number 8
gene id AMCG00005204
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18728705 ~ 18733928 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CTGAGATAAGACATTGTGTCAAATGTTACTTTGTTGCCGGTGACTGATTTTTCTGAGGGTCTCCGCTATGAAGAAGGTGGTCCTGGTGACGGGTGCCAATAGCCAGATCCACCTGTGTCTGGCGTGCAGGAATATGCAGCGTGCCAAGGCCGCCAAATCCGCCCTCCTCGTCTCCCACCCGGACGCTGACATCTCCCTGGTGCGCCTCGATGTGTGCAGCATCAAGTCTGTGTTTGAAGCGGCGGAGGAGGTCAAACGGAGGAATGTGATTAGCATGTTTGCAACCGGGGAAGGTCTCCTCACACAACAGGACCGCGTGACATCAGACGGATTGCAGGAGGTCTTCGTCACCAATCTCTTCGGCCATTTTCTACTGATCAGGGATCTGCAGCCGCTCCTGTGCCAGCCCGGCCACGTCTCCCAGTTGGTCTGGACATCATCTAGTAATGCCAGGAGGTCTGCGTTCAGCCTGGGAGACTTCCAGCACAGCCAGGGAGTGGAGTCGTACAGCTCCTCGAAATACGCCTCCGATCTCCTCAGCGTGTCTCTCAACCGGCATTACAACACACGGGGCCTGTATTCCTCAGTAATCTGCCCAGGACTTGTGATGACCAATCTGACTTATGGCATTCTCCCTTCATTCTTCTGGACACTGATCATGCCCATTATGTGGCTGATCCGCCTTTTCACCAACACTTTCACACTCACTCCGTACAATGGCGCAGAGGCCCTGTTCTGGCTGTCTACGCAGAAACCCGAGGCCTTGGACCCTCGAGCGAAGTATCACAGCATGACTTCGGGGCTGGGAAACAACTACACACTCCCCCGAAAAatggACATTGATGAAGAAATGGCCGAGGCCTTTTATGAGAAACTACTGCAGCTGGAAAACCGAGTCCGGAAGAAACTAAAATCTGAAGAAGATGAACTAGATGCTTACAGAAGTTACCTGCATCAAATTGAGTAGTGTTGATACCTGATCTCTCTCACCTCTTTAGCGAGTTTTACATTTATGATTCTGTTACAGGCATCACATTCCAAAGAAGCTGTCATTCTATTGAGTTCAGCTTTTGATCAGGGgctggttgcataaaactatattagacttGTCTTAATTTGACAGAATAGTCTAATGTAAGTCTTGTTCGTAACGTTctacagaaaaatatacaaatggaTGAAAATAGTTTGAAAGGCAAGCCAGATTGCTGAAGTTACTCTATTTGCATAATGGCATGgacatacaatacaaattaaggTCAGGTACtcattgcttttgtgtttagGTGATTTATTATTAGTTGCACAGGGAATATAGAATTTGCCCTTCATGCTTTAAGGGAGCTGAATGGTTTGGGGTTTGAGATCACTGATGCAACAGGCCTGTCTAGTCTTGCCCCTAGTGAGGCCAGACTCTGTGGAAATCCCAGTAAAACGTTTAATTTCTGGATGGAGGCTTCTGGGAATCCTCGTTATTTCCCTCTGGCCCATGGCAAGTGGGATTAAACCGGCGGGGgaaaggaacattttaaaagcgaGGCATTGACGCTGGGACTGTGCCATCCAGATCTGCATACTGAACGCTCTAATTCTGTACTGTGAAGCTGGCACTGAAATAGCTGTGTGCGTTAACCTGCGAAGGAAAGGCATCAACAGCCACTTCGCCAACACTGTGATCTAGCCGCACCATatggagtgagaaagtgaagggcATAaggttttgcatattttatatttgttttatctaaGAGCTCCAAAAAAAAGAAGTACAGCAAACACTTTTTCTAACAGTTTTAGTTAAGAGTCCCACTGGGTTTACATAATCCCAGACAGTCTGTGGCAGAGTTGTTACGTTTTGTTGTACACTATTACCGCATTCTCAGTTGTGTTGGAATCAACCTATATCTTATCAATGCTTGCATCTTCTCATGAGCTTCTTAAAGGAACCTTCATTCAGTCAAAACTCGAAATAAATCAAGGCTGTAGCTATCGAGTTTGAAAGTTGCAGTTTagatacatttcattttcttcttatgGGTTTTTTGAAAGGTTAACAGTGAACATGTGCCAACCCTCGTGCAGCAGAGAATagtatttcctttgttttagtGGAAACTAGATTGACCACGGTTCAAACATTAGATAATAACACTACACCCAAGGATGCAATTGTCACTGAGGGAAAGACAGGATAACACAAAAGTCAAAGGTGATGTATGTGCTTCTTCTGAGAGTATTAGGTCTTTAAAGACAATGGAGTGGCTATACATGCTTATGAGTTTGGTTATGAAATTGTACTACACTGACACAAACCTCAGACTGTTCACTGTTCAGCCTTTTAGGATTCATCATGATTAGTTTCAATGAACTGTagtgcaaaatataataataattaagtgcTTGTTTAATTCTAAGTACCTGGTAATATGCTGCTATCTAATGATTGTCTTATAGTCCATACTAAGATCTAATTGTCATACTATTCATGTACTGTGGAACCAAAATATGGCTTGGTCAATAAATGATACATACTAAAAA

Function

GO: NA

KEGG:

id description
K13373 HSD17B7; 17beta-estradiol 17-dehydrogenase / 3beta-hydroxysteroid 3-dehydrogenase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183698 lncRNA upstream 185865 18541256 ~ 18542840 (+) True G146043
TU183673 lncRNA upstream 430602 18297874 ~ 18298103 (+) True G146021
TU183614 lncRNA upstream 656930 18020892 ~ 18071775 (+) True G145975
TU183597 lncRNA upstream 869070 17859136 ~ 17859635 (+) True G145960
TU183557 lncRNA upstream 992001 17735023 ~ 17736704 (+) True G145928
TU183756 lncRNA downstream 22147 18756075 ~ 18756595 (+) True G146088
TU183758 lncRNA downstream 23739 18757667 ~ 18757871 (+) True G146090
TU183759 lncRNA downstream 30115 18764043 ~ 18764298 (+) True G146091
TU183799 lncRNA downstream 86429 18820357 ~ 18821642 (+) False AMCG00005199
TU183835 lncRNA downstream 159139 18893067 ~ 18896727 (+) True G146140
AMCG00005205 mRNA upstream 2490 18713405 ~ 18726215 (+) True AMCG00005205
AMCG00005206 mRNA upstream 32999 18684208 ~ 18695706 (+) True AMCG00005206
AMCG00005195 mRNA upstream 64440 18645445 ~ 18664265 (+) True AMCG00005195
AMCG00005194 mRNA upstream 93653 18630414 ~ 18635052 (+) True AMCG00005194
AMCG00005192 mRNA upstream 192478 18526096 ~ 18536227 (+) True AMCG00005192
AMCG00005203 mRNA downstream 8064 18741992 ~ 18753590 (+) True AMCG00005203
AMCG00005198 mRNA downstream 59804 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005199 mRNA downstream 81101 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005197 mRNA downstream 90963 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005217 mRNA downstream 358299 19092227 ~ 19115694 (+) True AMCG00005217
TU183561 other upstream 957180 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 3344093 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 5947535 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7065337 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 10997705 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 845645 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 1448426 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 1539585 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 1787721 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1927998 20661926 ~ 20670169 (+) True G146596

Expression Profile