RNA id: TU183766


Basic Information

Item Value
RNA id TU183766
length 5320
lncRNA type sense_over
GC content 0.46
exon number 8
gene id AMCG00005207
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18741884 ~ 18764298 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaatgtaataaaaacatttatttttgatgtaacATTGTGACACCGGAAATTACATTCACTAACCAATATTTATAAGCAGGAAAGTATAATTGTACCAGATAACTGGATGTATAGGGCTTTAACAATTCATAACTCAGTTCTCCAGATGACCAACCCAATTTTTAATGGAATAGTagtcaacatttgtttttgtttttctccaaggTGTAAAAAGATCTTAAATCTCGTATTTGTGCCTTTCTACGCGTCGACACATTTAGCTGTGATGGTccatcttttaaaatacaggCACAACCCACAGATACGCCAGCaaaatacttttcattatattttattgggAAATTACCATAACAGCTTGTAATCATaagataaaaacaatgttttacaacTATACCCCAAGTAGTCTGCTTGGTGTCCGTATTTCCTGTGGATGACTGTCTCTAATACTGAAAATACTCCAAGAGATTCAGTTTAATCAATGAGAAATGCCGGCCAAATCAATGTTCAGCACCacattggtctttttttttttttagtgtgaaCTAACCTTGTGCTTTCCAAGATCCGTAAATCTTTTCATCATAAATGTGAAGGGGGACAGGATTTCACCTTTTATAGACAGGGTCCCGTTTTTGTGATAGATCTCTGTGCTGCTCACAAGTTTCACAGCTTTTAAACACCTCCTGAATCCCAATCCAATCACAAACCAACTAAAAAGATACttcacagaagaagaaaaaaagctgaaaCACTGAAGGAGTCACTCTCAGAGAGGGCCAGCGAACACCGAGGGTGGGGTTTGGACCGAGCGTGGGAGCGGTGGCGGGTGTACAAGGCCCACGATATTAATCGCACTGACGATATAAAAACATGACCAGCTTGCGAAACACAGATTTGTATGGACTGACAGATTTAGAATAGAAGTTGGATGCAGCTGAACTGCATCTTTGAAGGAAATGGTAAAAGTCCTCTGACGTTAATTAAATTACCCAGCATTCATCCCTAGCAAACTTAACACGACAGTACGATATTTTAACACCTTCAAAACTCTTCACAAGTAACCTGTAAACCAAGGCCAATAATGGATACGCTCTTTTAACTTGTACAGATCTCTGAATCTCGATAAGCTTATTCTCAGTATCCACATAAAAACTTAAACCCTTCGTACAAACCATGGTACAGTAACGGCAAACGAAAGCTAGACCACAGCGCTACACCAAACCTCTTTGGTGTTAATCTAACGATGCTTCCGACTAAATCAGCGACTTAATACCTGTGAAGATAAATAACAAAgtaaggaaataatacatttaaagtgcaAAACACTCATTTGCCTTTATCTTCAAGCTACTATATACACGTCTGCCGAATGACTCACAAATCCAACAGGAAGTTTAAATTCTAGGCACCAATCGTTCTCGTTTCCAGTTCGAAAAGGATTTCCTTTAAGGAGCCACTGCATTGTAACCAAACAGCGGAGACTGCGGCACAAACCTAGAAAattatccaaaaaaaaaaaaagggggggtaAAACTTCAGAGGTTGAAGCTGTGCTCAGTAACTGAAATGATTTGAAACTTGTCAGCTTGACATGTGTAGTACAACTCTAAACCCATCTACAGcttccattaaaaacattcatGCTGACCTCAAATACCAACATAAAACTCTTTCAAGATAGCCAGGCATGCTACCCAAACCTCAGGATCGCAATTTCCCCAGAAGTGTGGCTTAAGCTGAAGGAGGTAGCATCAAACAGCAAGAGAAGATGGACCCATAACCGCCAAGGTAAGAATCCCACAGACCATTCAAAGGTTAAATATGTTGCGGCTTACTGCCACTTAGTAAAAACAACTCATATTTTCATcaacacacgcatacacacatacaagagTTGTCTACAGCAGTGCAGATACAGAGGATCAGTTTCAGATCAAACCAGAGACAAACAACACTGAAGGCAAGGAAAATGAACCCACACATCCAAATCCTTCCTCTAAATAAGGCAGCATACAAATCAATGACACCATATGGACAAAATCCCTCCCAATTGAATTCAACATCCAGTCCAGCAGGTCGTATTCAAAGGCAAAACTTGCAATACATCAAATGTGGAACTTTTAAAAAGATCAGGTTCAAAATAAAACCCACCCAGCCTGTATTCTGTATAAACCAACCACCCAAGAAAAATGAATCGAGACAAAGCTGTaatgattgttttggtttttttttttaaccacgaATGAAACAGTAATCAGTCCACACTACTCACAGCCTCAGGCAGAACACATTGAACACCTCCAAGCCATTTATTAGAACAGGGATGTTTGCAAAAAGGGGTTTAAGACAAGAAACCCAAACTTGTCTGGACCCAACAGCTCTACAATAGAAAGTCTGCTCCGGCCACTCCTTGTATGTACATCACCAGGTAGACTTTCACACTAAATACACAGCGTTCTGCTTATTAGTGTCAGACCTAAATGACACCACTTGGgtgctaaatatttaaaaactacaaTCCAGATTTCATCACACTTACCATTTTCCGAGTAAAAATGGAAATCGGCACAAATGCCAATTAGCGGGATTAGCGTCCACACACGGACACCGAATTGTTCCCAATCGAACAATTGCGCATTTCTTTCAGGAGAATTATGCCATAATGCTGCTGCTGTATCAAGGTTAAAAAGGTTTtgggagatcaaaataaatctcaaaAACACCAAAACGGAGTGTCGGGGGAAGAGAGATTAAACCTTTATGTTGGTGGCGGTGGAAACTGAGTGGGTTTCGTCAAATAAGAGCGAGATACATTGACGGTATCAGCGGCGttcacaggaaacaaaaaccGGACCTGCGTCGGCCACCCCCAATAAATTAATGAGCAAATAGAGTGAAAGTGTTTTGAATGTAAgtggtcattttattttttttgaaagCGGTCGCGGTGAGCCGGTTGATCCCTGGGTTAATCCACTTCCTGAAAAcctgctttttaaatgagcCAGGGACCAGCTACCTACCTTAAGCCCTGATTCCAGTGAAACTGTCGGAACTATGCGGAATTCTAAATTCTAAAGTGAAGAATGAATGTATGAGGAGAGCGATGGATGAGGgagtgatttaaaattaaaccagcGAGTATCTCCGACTGGCAGAAACACATCATCTCTCACTATCGGCAGGTAAACAActgttaaaacatgttaaaaatgtCACACCGAGAGCTTCGTTTGCCAGTCCGGTACACCTGTACTGggagtcatgtttttttttttcatgtcaatACTCTTTCTGGTAGAGCTTGTCGATGCTGTAGATGATTCCTACAAAGTTCCGTTCGATTTGTCGTCTGtaggggggggaaaaaagcaagcCAGGGGACACAGTTAACTAACTGATACACACTCTTCACACCTATATttggaaatgcatattttcaagCAGCAATACAAAAAGTATTCATGAAGAATGCATAATCTCTGAAAAAAATCACTGTATGAAAACATCCCTGCTACCATTTCTCTAAATACAAAACCTTCTACCAATATTTTGCTTCTGTGTAGCAAGAGAagtcctttttccttttttttttttccttttcttttttaaaacagataaaATTCAGTCCTCAGGTGTGAATGGTATGGATGACAgtcttttcgtttttttttttctttttattatagttgAAGGATCCATAAGCATGCAAGCCTCGTAGAGGAGGGCCCGGCGGAGGGCTTAAGGTTTGGGCCGACGGCGACTTCTCTAAGCCAGGGCTGGGAAAGCCTCCGGATCATCCACGTTGGGAACGGAGATGCCACCAGGCTGcgggaggaggggaagaaaggGTTAGAACTAGATCACGACTTGAAGAAAACTCAAGTGGGCAAACATATTGGAAAACACGAGTAAAGCCGAGGCACGTTTCCCCGAAGGACAGAGATCTCAGACGGTGCGGAGGTTGAACTGCCCGCTTGGTACAGAACGTCCATTTCCGGTCTCGGGTCGGGATATTCACCTTGTCAGTCCGGCCCCCACGCACGGGCCTGGTGGCGCCGGCGGCCCCCCCGGCACCGCCACGACCTCGGCCACCACGGGGTCCCCCGCGGCCACGCCCAGGGCGGCCCAGGTCTCCGAAGTTGATCTCCAGCTGGGATGTGATGTCGTTGGCCGGTTTCCGGAAGTGGTGTTCGCCGGAGGCTTCATCGGCCGGGGCCTTTTGGTAGAAGGCAGGTGCTTCGGGTTCCGTCTCTGCACTGTCGATTAAAGTACCAGCAggtctATCTTCGCTCTTGGACTTGTGCAAAACGTATCCTTTCTTCCACTGGCCGTCGGTGCCCTCGTTGGGTTTGCGGATGTTGAACTCGACCTTGGCGCGCTCCTTGTCCTGCATGGCCTTCCATTCGTCCAGAGTCATCTCCTTGGGCCCTTCCTCTTTGACCTCCTCCACCTCGTTCTCCTTGTTTTCAGAGTCGGCCACGGGGTGTTCCTCTCCCTCGGGAGTTTCCTCGGTCACGGTGGATTGATCAATCTCGCTCAGTTCGTCCTTTACGGTGCCCCAGTTGTGAGATCCACTCCCGCCACGCTTTTCTTCGGCTTTCAGGCTgGATCGGTCGCTTCCGCTGTGTCGGTCGAATTCACGCTTGCCACGAGAGTCGAAGCCGTCGCTGCGGCCCATGCCACGCCCCCGGCCGCCGCGGCCCCCACGTCCACCACCACGCCCCCGCAGAGGCCGGTCACCCACAGATCCACAGAGAACTCCCCGCCCTCGGGCTTCTCCTCAGTGGGCTTCTCGAAGCGCCGCTCACGAGGGGGCCGCCTGTCCGGCCGCCGGTCTCCAGGCCTGCCCTCTCCTTGACCCTGCTGCTGGAAGCCCTGCTGCGGGGGCTGCTGTCCCTGGTGTGgggtctgctgctgctgctgctgctccggCCGGCGGCCAACTCTCCTGATACCTTTTCTTCAGGGGCACGGGGGCCTGTGTTTCCTCCTTCTTGTCGAAGAGCGGGTTCTTCCTGTCCTTCTGCGACTCCTTCTTCGGCTGCTTGGCGGCCTGGGCAGCCGTCTTGGCGGTACCGGTGGCGGCCCCGTCCTTCTTCTTGTTCTCGGCCGCCTTCAAAACCTCGAACGGGTCGGTCTCGTCGTCTAATAGCTGGTCGAACCGATTGGTTACGACGCAGCCGAAGCCTTCTTGCAGATGTCCGGGCATGATGGCGCCCCTTCAGCGGGATTCTCCTCCGATTCTACGAGGCTTGAAGCGAACAGCTCGCTGGATGTTGCCACAAGATGGCCGGGAAAGAGACCTTCTTCTCTTCCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183675 lncRNA downstream 389752 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 443781 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 716210 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1195552 17543163 ~ 17546332 (-) True AMCG00005158
TU183346 lncRNA downstream 1776810 16964203 ~ 16965074 (-) True G145760
TU183906 lncRNA upstream 330462 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 464858 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 464891 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 710474 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 857233 19610766 ~ 19611005 (-) True G146315
AMCG00005209 mRNA downstream 3741 18733960 ~ 18738143 (-) True AMCG00005209
AMCG00005196 mRNA downstream 57088 18679066 ~ 18684796 (-) True AMCG00005196
AMCG00005193 mRNA downstream 196471 18542551 ~ 18545413 (-) True AMCG00005193
AMCG00005178 mRNA downstream 632431 18103258 ~ 18109453 (-) True AMCG00005178
AMCG00005179 mRNA downstream 652769 18087405 ~ 18089115 (-) True AMCG00005179
AMCG00005208 mRNA upstream 21935 18775468 ~ 18781565 (-) True AMCG00005208
AMCG00005202 mRNA upstream 53538 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005200 mRNA upstream 73453 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005201 mRNA upstream 78424 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005210 mRNA upstream 139548 18893081 ~ 18909992 (-) True AMCG00005210
TU182803 other downstream 3774261 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5405138 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6585506 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6585506 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9835290 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 261014 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 816526 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 1004699 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1267177 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1267177 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00064059 False 2344 mRNA 0.49 8 NC_007117.7 34931597 ~ 34938746 (-)
grasscarp (Ctenopharyngodon idella) TU561697 False 2511 TUCP 0.47 6 CI01000340 6694221 ~ 6700788 (+)