RNA id: AMCG00005208


Basic Information

Item Value
RNA id AMCG00005208
length 1487
RNA type mRNA
GC content 0.51
exon number 10
gene id AMCG00005208
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18775468 ~ 18781565 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ACGGTCTGAAGCTGGTTCCTCGCGGACTCATCCGTATCGAGCCTGGACCCGTGTTCCTCATGGGCTCCAACGTCACCGTCTACTGCCATTCTCTCAAGGTCAACTGCCGTGACAGATTGCAGATCTATCTGAACGAAGAGCAGCAGACGTCTCTGGAAAAAGTGAACTGTTCAACGGTCAGGCTTCACCTGGTGAACTTCCGAACCCCTCAATCCACTCTGAGGTGTGATGTGGTTCACCGAGATATAAAGACGCCCATCTGTGGCCAGACCATCGAACCAGGATatCCCCCAGAGAATCCGACAAATGTAAGTTGTCTGACCCGAAGGGACTCTAAAAGCATGCTATGCAGTTGGAAGAAAGGGAAGGAAACCCATATAGCCACGAGCTACACGGTGACATTCGAACAGACCAAAACCTTTTCTCTTCAGAGTGATCATGCAGAGAAAATCCAGGTGGCTTTGTCCTCCTTTGAAAACGAGTTCAGTGTTTCTATAAAGGCAAAAAATCTCCTTGGAGAAGCACTCTCTGACGTCATACATCTAAGAGTTAAAGACATAGTAATACCCAACCCACCCACGATAACCAGCGTAGATTTTGTGAATTGTTCTGAAGAGGCTGTGGTTCATTGGAATGAGTCAGAGACCCCTGAATCTCTGAGTGTTAGCGTGCGACACAGTCCCGGGAACGGCCACCGAGTTTGGCCCTTCACCCAGTATGCGTTTCAGATGCAGGCCTGTGTGGTGAACCGGACGTCCCAGTGCAGCGGATGGGGCCCGTCTTTCACCGTGAGGAGCCCAGAAGCAGCACCGTCTAAAAGACTGGATCTGTGGCAGATCGTTGGAGGCATTCAGGGCACCAGAACACGGAATGTGACGGTTCTTTGGAAGCCCCTCGCTCCTCAAGATTGCAGAGGACAGATTCAGGGATACCGGGTGTTTTACCGTAAGGACGTTGAGGACGATTCAGTCGTCCATACATGTGAGGCCAATGCGACTCAGTACACGGTTACTCTGCCGCCTGCCGTACGACGTCTTCTGGTCACCACCTTCACCTCCGCAGGAAGTTCCCCGGCCGCTGAACTCATCACCGGACAGACAGTTCTTGGGAAACCCACAATTACAAATCTGACATCTGTGAGTCGTTCTGCGCTCTTCCTGACTTGGGAATCATACTGGTACCAGAATGAACCGGCGCTCTGGTACATCATACAGTGGACTGGAAATGACCAGGACATACAATGGAAAAAGCCAATTCCCCTGGAGTCAGGTTTACCATTTTACTGTTCGCCGTCACAGCACAAGGGGAGAGCCAGCCTGCCTCTGCCGAAGGAACCACTAGCTGGGCCAAAGGTGTTGATACTCAAAACTGAGGAAAGACGAATTCTAATCCAATGGGAGGAAATTCCCCTACACCAACGGAGAGGATTTATCCGAAACTATATAGTGTATCTGATGAAAGACCCAGAGCAggcctttttaaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 21935 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 423336 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 477365 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 749794 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1229136 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 302430 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 436826 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 436859 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 682442 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 829201 19610766 ~ 19611005 (-) True G146315
AMCG00005207 mRNA downstream 11170 18749858 ~ 18764298 (-) True AMCG00005207
AMCG00005209 mRNA downstream 37325 18733960 ~ 18738143 (-) True AMCG00005209
AMCG00005196 mRNA downstream 90672 18679066 ~ 18684796 (-) True AMCG00005196
AMCG00005193 mRNA downstream 230055 18542551 ~ 18545413 (-) True AMCG00005193
AMCG00005178 mRNA downstream 666015 18103258 ~ 18109453 (-) True AMCG00005178
AMCG00005202 mRNA upstream 25506 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005200 mRNA upstream 45421 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005201 mRNA upstream 50392 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005210 mRNA upstream 111516 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005211 mRNA upstream 129596 18911161 ~ 18972862 (-) True AMCG00005211
TU182803 other downstream 3807845 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5438722 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6619090 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6619090 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 9868874 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 232982 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 788494 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 976667 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1239145 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1239145 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile