RNA id: AMCG00005211


Basic Information

Item Value
RNA id AMCG00005211
length 897
RNA type mRNA
GC content 0.60
exon number 12
gene id AMCG00005211
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18911161 ~ 18972862 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTCGGCAAGAGAGCCCACGTCCAACGAGCTCACCGCTCCTGAGCCGGAGTCCTGCATCCGGACCTTCAAGGAGCACATGCACCTGGAGCTGGAGCCCCCGAAACTGGCGGGGACCGGCACCAGGTCTCCCAAGATCTCCCCCCGCAGCTCGCCCAGGAATTCACCGCGCCTCTTCCGAAAGTTGCTGGTGAACAAGAGCATCCGTCAGCGGCGCAGGTTCACCGTCGCGCATACGTGCAGCCACAGCACATCGGGagtGACTCTTTTTCTGCAAGTTTATTTTTACTCCGTGCCTTATCATACGCCGAGAGAACTGCGCCTTACCGTACgcttcagaaatAGGCAGCAATCGTCTAGCAGACCTGAGACGTGGTACAGCGAgctgagaCATCTCGAGACGAAGGCACAGCGTAAAACCTTTGATCTGCAGGCTTCGCTCGGCTCGGAGGGGAGGGCGGCCGCGCTTCTGACGGCGCAGGTGCACCGCGGGGAGGAGCTAATCCTTATTCCCTGGGGTGGGACAAGAAGCAGGGTTCATTTTGACTTCAGCGAGGACGTGATCCGGAGGGCGTACGCCAGCGGACTCAGCGTACCACTGGTgctaatCTTTGATGTGGAGAATGGCCCGTCTCCGAGTCGCAGCCCCCTGGACCCCCAGGCCAGCCCGGGCTCGGGGCTCGTCCTGCACACCAACTTCCCCGGACACAGCCAGCGGCGCGAACACGGAGATGACTTGATTGTTACACCTTTTGCTCAGGAGGTCTCCCACCGCAAATCAACCACCTATAACAAGAGTCTGCCTGCCAGAGAAGAGCCAGCAACCACATCAGCGCCTGCCACATGTGGTGAGCGCCGGAAACCCCCTTCTTACGTGTGTGTGGTGAACCAGCTCTGa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 157628 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 559029 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 613058 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 885487 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1364829 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 111133 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 245529 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 245562 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 491145 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 637904 19610766 ~ 19611005 (-) True G146315
AMCG00005210 mRNA downstream 1169 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005201 mRNA downstream 59193 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005200 mRNA downstream 80766 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005202 mRNA downstream 97826 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005208 mRNA downstream 129596 18775468 ~ 18781565 (-) True AMCG00005208
AMCG00005216 mRNA upstream 5773 18978635 ~ 18982040 (-) True AMCG00005216
AMCG00005214 mRNA upstream 40215 19013077 ~ 19024461 (-) True AMCG00005214
AMCG00005212 mRNA upstream 69958 19042820 ~ 19047365 (-) True AMCG00005212
AMCG00005215 mRNA upstream 80116 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005213 mRNA upstream 99293 19072155 ~ 19080603 (-) True AMCG00005213
TU182803 other downstream 3943538 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5574415 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6754783 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6754783 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 10004567 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 41685 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 597197 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 785370 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1047848 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1047848 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile