RNA id: AMCG00005213


Basic Information

Item Value
RNA id AMCG00005213
length 3149
RNA type mRNA
GC content 0.41
exon number 6
gene id AMCG00005213
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19072155 ~ 19080603 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

GGCATCCCAATAAACTACAGCTCCCAGAATGCCCGGTGCGTTCCCGGTGACGTCACGGGGCTGTGCCCGCATTCCTGCACGACGTTGCGGGGGCGGCGCTCAGCCCCGCACAGCTGGGCCCATTCATCTGCGCCCGCTTTCTTAAAGACACAGTGCAGCGCTGGCCCGGTGGGTGGAGAGTTTCATCTGTTACTCACTTGCTCtgaatattttccatttgaatgtTAAAACGCCATTTTGCAGAAATATACAGAGCTTGCAAAGACCCTTGGGAAGGAAATGGCCAGTAAGATCTTCGGGGCCGTGGTCCTGGGTCCGCCGGGATCAGGGAAAGGCACCATCTCCCAGAGACTCGCCCAGAGCTTCGGCCTGCAACATCTGTCCAGCGGTGACTTCCTGCGGGAGAACATGGCAGCCGACACGGAAGCGGGCGTTTTGGCCAAGAAATGCATCGAAAAGGGCCACTTGGTTCCCGATCATGTTATAACACGGCTGATGCTGACGAGACTGGAGAGTATGACCAGGCACAGCTGGGTTCTTGATGGCTTCCCTCGCACACTGGCGCAGGCCAACGCCCTCAACAGCTCCTGCAAGGTGGACCTGGTGGTGAGCCTGAACATCCCCTTTGAGACGCTGAAGGAGAGGCTGAGCACGAGGTGGATCCACCCGGCCAGCGGGAGGATGTACAACATGGAGTTCAACCCGCCCCACGTCGAGGGGGTGGATGACATCACCGGCGAGCCGTTGATACAGCACGAAGATGACAAGCCCGAGGCGGTGGTGGCCCGGCTCCGGCACTACAGAGACATCGCCAAGCCCGTCATAGACTTATATAAGAAAAAGGGCATCCTTCACTCCGTGTCTGGGACTGAGACGGATAAGATCTGGCCCTATATCTACTCTCTGATGTCCACAAAGATCCCCCCGCTGCATCCGAATGAGCGCCAATCCGCGCCACGATGCAGCCGTGAGCAGTAAGGGACTAGTCTGGAGGGAAATGAATAGGACAGAGGGGTATATATGGTCCTCGGATCACTTTATAAACAGAAAGTTCTTTAGATCCAAACGTCAATCCATGTAGGAGCCTAAACTATGACTTTTtataaggaaagaaaaggaaagagagaaatgcCATTTAAGGAAATATTGCCTGCGAAAGCAATGCCTTGTAGATGattttataatacatgttttatgaaactatttttgtaatatataagcTATGACGGTTTAATTAGAGGTGGATTAAAGTAATCTATAATGCTGGAGTAATAACCCCAAGAAACTGAATGGAACCAGTCAGGCTCAGTGTAAAAGGCTTTTTCTTAAAATCatagttcattttaaatattaacacagCCTTTATTTGACATGGTAGCCATATAATCTAGTTTGAATGGACGTCTTTGCACCTTAAACGAATCATTCACAGATTCCTACTTATGTAGTTACTTTTAAATGACTGCTGTCAAGGTCTGTGTGAGCTTCAGTGCCCATGATTAACATTCAATATGTCTGCCTTTGTaatcatttgtttctctttcgAAGCGCTACAGTTACACTAACTAACAGTGTCTACAACACTAATGATTCAATAGCTTTATTTGTAAAGGCAGCATTAGCATTTATACTACACAGTTtgctttaaaacagaaacagatgaGTTACTTAAAAGCAAAAGTCTGTGGCTTTCaaataaactgaactgaactaaactaaactaaactaaactaaacctcTCTTTAAATCAAATGCTGTTTATCTAGGGATTCACAAGTTCTCAACCACTCATCGTTTTAATGGAACTATATTGTACAACTGTCAGCTGTCTTAACTAATGGAGTCCGTTTCCTTCTAGAcgtgtatgtttttgtgtaaatatACGTCAACAAAGTAATGAAGTTTGTCATGCTGAGGGGAAACAGTCTAACAGATGGTGAAAATGCAGCTTATGAAGTGATATTCGCTGAAGAAGCAATAACAGTGTGGTTGTGATTAACAGCCACGTCTTCCCAAGACAAATCGTTGCATTAAATGTCAATCTCTTTttgcttgtatttgtattattctcaaTTCTTTCGATATGCATCTGTAACCCTATGACAACCAATGATGTGATCCCATAATACAAAGGTGCTAATAAGgttattttctcaattttaaTCTTTCTCCAGTTTATTTCTAAACAAACTCAACTGACCAAATAcgatctgtgtttttctgtgggtGTGTATTTAGTGGAAGGTATTGTTTTGTCCTACAGTTTTCTCGTTCTTGGGCTGAACTGAAAACAAGGACAGATATTTCAGTGCATTGGGGCACCTTTGTGTTACAACGATTTTATATCTAGACATGGATGAGGCTGGAAAACTTTACTGAAGATCCTTCTGTTGCTGATTGTTGatgatttcatttcaattacACCCGTGCATTTCAAGAGCAACACACGCATGTTGATTAATATGTTTGTTAGGGTTGATGAATAACAGGAAATGTAGCCAAATACCTGAAAGTTAGAAGtcttgatatgttttttttactgtaaactGAACACCATATAAGAAATTGTAACAAAGCAAAACTATTAATAAATCTTCAATTTTACAACAAATATTGGAACCgcaaaatatttactttcaaagatagatagatataagaTAGTCATAGCTTACACTGTAATGATTTCATGTCATACCAGTATTATCACAGTTCACTCATTTCTCATTTCATTCTGAGATACATCTACTTACTTTAAGAATCAATTCCTGAAATAGAAACGCTcatatattttgcattgcacAAATATACCCCCCAGCTCTGCACGAAGgagaagtttgtttttgtaatagtatattataacaattatattttcaatcaaAGTGCAATCAATGttgaagaaaatatagaaacaaaatcacactTTACCTGCGAGTGTATTATTACAAGTTGTGTACTTCTCAGCACAGTTTGATTCTTTGATTCCtattgataaaataaatgcGAGTCCTGGGGGCAGAGCCGGGGTATTTAGTGGTCGCCATAGAATGAATCCTGTTCAAAATCCTGTATTGTGCAGTACTCTAACCTGTATGGGTTTCTTTGCAGTATTTGCATTCTGATTCATAtctgtacaaaattaaaaataaatt

Function

GO: NA

KEGG:

id description
K00939 adk, AK; adenylate kinase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 318622 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 720023 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 774052 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 1046481 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1525823 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 3392 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 137788 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 137821 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 383404 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 530163 19610766 ~ 19611005 (-) True G146315
AMCG00005215 mRNA downstream 5048 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005212 mRNA downstream 24790 19042820 ~ 19047365 (-) True AMCG00005212
AMCG00005214 mRNA downstream 47694 19013077 ~ 19024461 (-) True AMCG00005214
AMCG00005216 mRNA downstream 90115 18978635 ~ 18982040 (-) True AMCG00005216
AMCG00005211 mRNA downstream 99293 18911161 ~ 18972862 (-) True AMCG00005211
AMCG00005218 mRNA upstream 39561 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005224 mRNA upstream 71387 19151990 ~ 19201412 (-) True AMCG00005224
AMCG00005225 mRNA upstream 127135 19207738 ~ 19216139 (-) True AMCG00005225
AMCG00005223 mRNA upstream 139223 19219826 ~ 19226999 (-) True AMCG00005223
AMCG00005226 mRNA upstream 163096 19243699 ~ 19244617 (-) True AMCG00005226
TU183873 other downstream 56492 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4104532 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5735409 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6915777 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 489456 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 677629 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 940107 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 940107 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 1193788 20274391 ~ 20279746 (-) True G146532

Expression Profile