RNA id: TU183873


Basic Information

Item Value
RNA id TU183873
length 515
RNA type TUCP
GC content 0.61
exon number 3
gene id AMCG00005214
representative False

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19013077 ~ 19024461 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CACCGATCGACTGACTTTCCGATTCACGCTTTCTCTTCCAGATGACAGGGGGCGGCCGCGGGGGGAACACGCCGCCTACGTCCTCCTGCTGATCATCGCGTTCCTGTCAATCGTCCTGTTCGTGACCCTGGCGATCTCTCAGCACCAAATGAAGAAACTGGTCTGGAAGGAAGTTCCCAATCCTAATAACTGCTCCTGGGCACAAGGAGTTGACTTCAAAAAAGCCGAGACCATCGAGAACCTGTTCAAGCACCCCGAGAGCCTGACCTCGTGTCCCCTCCTCCTGCAATCCGAGACGATCTCCGAGGCGGTGATCGTGGAGAATATGAAGCTCCCGGCGGGGAAGAAGCCGGCGTCTTTCTCCGAGGCGTCCCCATCTGCAGAGGAGGAATGCCCTCGTCCGGTCCACCAGAGCACCGCGGAGCCCGTGGTCCCCGAGCAGCCCCCCGCCACCAGCTCGGAGACCTCCGCCCAGTCCAGGATACAGTACGCCACGGTCCTGATCCCCGAGGAGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 261014 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 662415 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 716444 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 988873 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1468215 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 68332 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 202728 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 202761 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 448344 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 595103 19610766 ~ 19611005 (-) True G146315
AMCG00005216 mRNA downstream 32507 18978635 ~ 18982040 (-) True AMCG00005216
AMCG00005211 mRNA downstream 41685 18911161 ~ 18972862 (-) True AMCG00005211
AMCG00005210 mRNA downstream 104555 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005201 mRNA downstream 162579 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005200 mRNA downstream 184152 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005212 mRNA upstream 27157 19042820 ~ 19047365 (-) True AMCG00005212
AMCG00005215 mRNA upstream 37315 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005213 mRNA upstream 56492 19072155 ~ 19080603 (-) True AMCG00005213
AMCG00005218 mRNA upstream 104501 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005224 mRNA upstream 136327 19151990 ~ 19201412 (-) True AMCG00005224
TU182803 other downstream 4046924 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5677801 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6858169 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6858169 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 10107953 8872885 ~ 8906594 (-) True G144115
TU184064 other upstream 554396 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 742569 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1005047 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1005047 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 1258728 20274391 ~ 20279746 (-) True G146532

Expression Profile