RNA id: AMCG00005216


Basic Information

Item Value
RNA id AMCG00005216
length 309
RNA type mRNA
GC content 0.66
exon number 2
gene id AMCG00005216
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 18978635 ~ 18982040 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGTATGGAGACGCTGAGACTGGCCACGATCAACCAGTCGAACCAGGGCACAGATACTGGGACGCTACCgaCAACAAGGAGCCATCGGACTGTGGCCCCGGTGAGTCGTTCGCTGTGCCGATGATGTCCCTGGGCGTGGACCTGCGCAGGGGCCGGCGGCGGCACTCGGGGACCCTGCAGCTGCCCCCGCTGGCCTGGAGGCAGGCGGAGAGGGCCCGCACCCCTGACGAAGAGATGATGGCCCGGCCCACCACACTGTCCTTCATCACACCCCGCATAGACATCACGCCCGTGGACCCCGAGTGGTGA

Function

GO:

id name namespace
GO:0002011 morphogenesis of an epithelial sheet biological_process
GO:0055113 epiboly involved in gastrulation with mouth forming second biological_process
GO:0090504 epiboly biological_process
GO:0001702 gastrulation with mouth forming second biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183766 lncRNA downstream 225102 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 626503 18351867 ~ 18352132 (-) True G146023
TU183674 lncRNA downstream 680532 18297847 ~ 18298103 (-) True G146022
TU183641 lncRNA downstream 952961 18024765 ~ 18025674 (-) True G145995
TU183496 lncRNA downstream 1432303 17543163 ~ 17546332 (-) True AMCG00005158
TU183906 lncRNA upstream 101955 19083995 ~ 19086041 (-) True G146189
TU183949 lncRNA upstream 236351 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA upstream 236384 19218424 ~ 19219758 (-) False G146227
TU183990 lncRNA upstream 481967 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 628726 19610766 ~ 19611005 (-) True G146315
AMCG00005211 mRNA downstream 5773 18911161 ~ 18972862 (-) True AMCG00005211
AMCG00005210 mRNA downstream 68643 18893081 ~ 18909992 (-) True AMCG00005210
AMCG00005201 mRNA downstream 126667 18831957 ~ 18851968 (-) True AMCG00005201
AMCG00005200 mRNA downstream 148240 18826986 ~ 18830395 (-) True AMCG00005200
AMCG00005202 mRNA downstream 165300 18807071 ~ 18813335 (-) True AMCG00005202
AMCG00005214 mRNA upstream 31037 19013077 ~ 19024461 (-) True AMCG00005214
AMCG00005212 mRNA upstream 60780 19042820 ~ 19047365 (-) True AMCG00005212
AMCG00005215 mRNA upstream 70938 19052978 ~ 19067107 (-) True AMCG00005215
AMCG00005213 mRNA upstream 90115 19072155 ~ 19080603 (-) True AMCG00005213
AMCG00005218 mRNA upstream 138124 19120164 ~ 19146827 (-) True AMCG00005218
TU182803 other downstream 4011012 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5641889 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 6822257 12154125 ~ 12156378 (-) False AMCG00005011
TU182157 other downstream 6822257 12154125 ~ 12156378 (-) True AMCG00005011
TU181238 other downstream 10072041 8872885 ~ 8906594 (-) True G144115
TU183873 other upstream 32507 19014547 ~ 19015663 (-) False AMCG00005214
TU184064 other upstream 588019 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 776192 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 1038670 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 1038670 20020710 ~ 20023507 (-) False AMCG00005256

Expression Profile