RNA id: AMCG00005219


Basic Information

Item Value
RNA id AMCG00005219
length 2219
RNA type mRNA
GC content 0.57
exon number 12
gene id AMCG00005219
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19316755 ~ 19330003 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

CGTGGCGGGCCGAGGGGGCCGGGGCGGCGGAGTGAGGACGTGGGGGGCAGTTCCTCGTCGCACATCGCATCTCTCTGGACGCGGGACACGCAGGGCACGGCTTACGGGGACAAAATGACGAAAATCACAAGTGTCAAGACCACGCCGTACAGCGACCAGAAGCCCGGCACCAGCGGCCTCCGCAAGCGGGTCACCGTGTTCCAGCAGAACCCGAACTACGCGGAGAATTTCATCCAGAGCATAATCTCCACCATCGAGCCGGCCGAGAGGCAGGAGGGCGTACTGGTAGTGGGGGGGGATGGACGGTTTTATATGAAAGAGGCGATTCAGCTGATCATCCGGATTGCTGCAGCCAATGGGCTCCTGACTTTGCCAACCGTCCCGTACTCCGACCAGAAGCCAGGAACCAGCGGACTGCGGAAGAAGACGTACATTTTCGAGACCAAGAAAAACTACCTGCAGAATTTTGTGCAGagcatatttttttccattgatCTGAGAGACCGGCAGGGATCAACTGTGGTCGTGGGAGGGGATGGCCGTTATTTCAATAAAGCCGCTATAGAAATTATAACCCAGATGGCAGCTGCCAACGGGATTGGCCGTCTGGTCATCGGACAGAACGGGATCCTCTCCACCCCGGCGGTGTCCTGTATAATTAGGAAGATCAAAGCCATTGGAGGCATCATTCTGACAGCCAGCCACAACCCAGGTGGACCCAATGGAGACTTTGGTATTAAGTTCAACATTTCCAGCGGAGGTCCCGCTCCAGAAGCCATCACCGACAAAATCTTCCAGATCAGTAAGACGATTGAAGAGTACGCCATCTGCCCTGAGCTAAACGTAGACCTGACCACCATAGGCAAGCAGCAGTTCGACCTAGAAAACAAGTTCAAACCATTTACAGTTGAGATCGTCGACTCTGTGGAGTCCTACGCCAACATGCTGAGGAACATCTTCGACTTCGCGGCCCTGAAAGAGCTGCTGTCCGGACAGAATCAGCTGAAGATCCGGATAGACTCCATGCACGGAGTGGTGGGACCGTACGTCAAGAAGATCCTCTGTGAGGAGCTGGGCTCTCCGGCCAACTCCGCGGTCAACTGTGTCCCCCTGGAGGACTTCGGCGGCCACCACCCCGACCCCAACCTGACCTACGCGGCCGACCTGGTGGACACCATGAAGGGGGGGGAGTATGACTTCGGCGCTGCTTTCGATGGTGACGGAGATCGGAACATGGTTCTGGGAAAGCACGGCTTCTTCGTGAACCCCTCGGACTCGGTGGCCGTCATCGCCGCCAACATCTTCAGCATCCCCTACTTCCAGCACACGGGCGTGCGGGGCTTCGCTCGCAGCATGCCGACCAGCGGGGCCCTGGACAATGTTGCGAAAGCTACCAAAATCACTCTGTTCGAGACTCCCACGGGCTGGAAGTTCTTCGGGAATTTGATGGACGCGAACAAACTGTCTCTCTGTGGAGAGGAGAGTTTCGGCACCGGCTCCGACCACATCCGCGAGAAGGACGGGCTGTGGGCGGTGCTGGCCTGGCTGTCCATCATCGCGGCGCGCAAGCAGAGTGTGGAGGACATCCTGAAGGAGCACTGGCAGAAGTACGGGAGGAACTTCTTCACCAGGTACGACTACGAGGAGGTGGATGCGGATGGAGCCAGTAAGATGATCAAGGACCTGGAGGCCACGATGCTGGACAGGGCCTTCATCGGACAGAAGTTTTCCGCGGGGGACAAGACCTACACCGTGGAGCGAGCGGACAACTTCGAGTACAGCGACCCGGTGGATGGGAGCATCTCTCGGAACCAGGGTCTCCGCCTCATCTTCTCTGACGGCTCTCGCATCATCTTCCGTCTCAGCGGGACGGGCAGCGCTGGGGCCACCGTGAGGCTCTACATCGACAGCTACGAGAAGGACCCCCAGAAGATCTACCAGGACCCCCAGGTCATGCTCGCCCCCCTTGTCACCATCGCGCTCAAAATCTCCCAGCTCCACGAGCGGACCGGCCGGACGGGCCCCACGGTCATCACATGAGCCCCGAGCAGCGGCACGCCGGTTCCAGCAGAGCGAGAGAGCGCTAGAGCGTAAACAACACCCCCAACTTCAAGTCTAGTCTTCCTTCAGAGTGTTTTAGGTTTCGTGACAAAATGtacacttaaaatatatatatatatttaaaaaaatcacaaaactaATAAAGCTGTTCAAAAGGA

Function

GO:

id name namespace
GO:0019388 galactose catabolic process biological_process
GO:0005978 glycogen biosynthetic process biological_process
GO:0005992 trehalose biosynthetic process biological_process
GO:0005829 cytosol cellular_component
GO:0004614 phosphoglucomutase activity molecular_function
GO:0000287 magnesium ion binding molecular_function

KEGG:

id description
K01835 pgm; phosphoglucomutase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183949 lncRNA downstream 96997 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 96997 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 230714 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 563222 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 964623 18351867 ~ 18352132 (-) True G146023
TU183990 lncRNA upstream 134004 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 280763 19610766 ~ 19611005 (-) True G146315
TU184074 lncRNA upstream 374001 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 424193 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 426244 19756247 ~ 19757237 (-) True G146348
AMCG00005226 mRNA downstream 72138 19243699 ~ 19244617 (-) True AMCG00005226
AMCG00005223 mRNA downstream 89756 19219826 ~ 19226999 (-) True AMCG00005223
AMCG00005225 mRNA downstream 100616 19207738 ~ 19216139 (-) True AMCG00005225
AMCG00005224 mRNA downstream 115343 19151990 ~ 19201412 (-) True AMCG00005224
AMCG00005218 mRNA downstream 169928 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005221 mRNA upstream 2238 19332241 ~ 19340709 (-) True AMCG00005221
AMCG00005220 mRNA upstream 19569 19349572 ~ 19359668 (-) True AMCG00005220
AMCG00005222 mRNA upstream 36138 19366141 ~ 19367265 (-) True AMCG00005222
AMCG00005227 mRNA upstream 136193 19466196 ~ 19475443 (-) True AMCG00005227
AMCG00005234 mRNA upstream 158647 19488650 ~ 19492515 (-) True AMCG00005234
TU183873 other downstream 301092 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4349132 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5980009 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7160377 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 240056 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 428229 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 690707 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 690707 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 944388 20274391 ~ 20279746 (-) True G146532

Expression Profile