RNA id: AMCG00005222


Basic Information

Item Value
RNA id AMCG00005222
length 705
RNA type mRNA
GC content 0.67
exon number 2
gene id AMCG00005222
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19366141 ~ 19367265 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGACCCTGTCTGGAGGCAGCCGAGCCCACGACATGTCCGGGCAGACGGTGCTCACCGCCGAGGACGTGGACATCGACGTGGTGGGGGAAGGCGACGAGGCCATGGACGGGGACAGCGACTGCGACAGCCCGGGCGCCCAGGACCGCGGCGAGGACGGGGGCGAGCTCGGCGGGCCCGACGTCCTCCGAGAGCAGACCGCCCTGATGATGCAGAGCTTCGGGGCGTACAGCCTGGGGAGCCCCTACGGCCGGCACTATGGCATCCACCCGGCCGCCTACTCCTCGCACCCGGCGGCTTTGCAGTACCCCTACATCCCCCCGGTGGGTCCCATGCTGCCCCCGACCGTGCCCCTCCTGCCCTCGGCCGAGCTCAACAGGAAAGCCTTCAATGCCCAGATCAGCCCCAGCCTCCAGCTGCAGCTGAGCAGCCTGAGCACGGCGTCCATGATCAAGTCCGAGCCGTCCAGCAGACCCTCCTTCAGCATAGAGAACATCATCGGGGTGTCCAGCGCGTCCTCCAGCGCGCAGACTTTCCTCCGGCCCCCGGTGACTGTCCAGTCGGCCTTGCTGGGCGCCCAGCCCCTGTCCCTGACCAGGACGTCAGCTGCTATTGCACCGATTCTCAGTGTGCCGACAAATATACTGTCTGGACAGTTCCTGCCCACAGTGTCCACCGCAGGGGTGTCCAAGTGGCCTTCTCCGTGA

Function

GO:

id name namespace
GO:0060351 cartilage development involved in endochondral bone morphogenesis biological_process
GO:0048484 enteric nervous system development biological_process
GO:0048485 sympathetic nervous system development biological_process
GO:0001755 neural crest cell migration biological_process
GO:0050935 iridophore differentiation biological_process
GO:0000122 negative regulation of transcription by RNA polymerase II biological_process
GO:0001822 kidney development biological_process
GO:0048846 axon extension involved in axon guidance biological_process
GO:0007389 pattern specification process biological_process
GO:0048937 lateral line nerve glial cell development biological_process
GO:0030318 melanocyte differentiation biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0001658 branching involved in ureteric bud morphogenesis biological_process
GO:0007422 peripheral nervous system development biological_process
GO:0051090 regulation of DNA-binding transcription factor activity biological_process
GO:0009790 embryo development biological_process
GO:0005634 nucleus cellular_component
GO:0005667 transcription regulator complex cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0008134 transcription factor binding molecular_function
GO:0003690 double-stranded DNA binding molecular_function
GO:0008301 DNA binding, bending molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183949 lncRNA downstream 146383 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 146383 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 280100 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 612608 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 1014009 18351867 ~ 18352132 (-) True G146023
TU183990 lncRNA upstream 96742 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 243501 19610766 ~ 19611005 (-) True G146315
TU184074 lncRNA upstream 336739 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 386931 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 388982 19756247 ~ 19757237 (-) True G146348
AMCG00005220 mRNA downstream 6473 19349572 ~ 19359668 (-) True AMCG00005220
AMCG00005221 mRNA downstream 25432 19332241 ~ 19340709 (-) True AMCG00005221
AMCG00005219 mRNA downstream 36138 19316755 ~ 19330003 (-) True AMCG00005219
AMCG00005226 mRNA downstream 121524 19243699 ~ 19244617 (-) True AMCG00005226
AMCG00005223 mRNA downstream 139142 19219826 ~ 19226999 (-) True AMCG00005223
AMCG00005227 mRNA upstream 98931 19466196 ~ 19475443 (-) True AMCG00005227
AMCG00005234 mRNA upstream 121385 19488650 ~ 19492515 (-) True AMCG00005234
AMCG00005233 mRNA upstream 156547 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005228 mRNA upstream 207971 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005230 mRNA upstream 255990 19623255 ~ 19627636 (-) True AMCG00005230
TU183873 other downstream 350478 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4398518 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6029395 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7209763 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 202794 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 390967 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 653445 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 653445 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 907126 20274391 ~ 20279746 (-) True G146532

Expression Profile