RNA id: AMCG00005226


Basic Information

Item Value
RNA id AMCG00005226
length 405
RNA type mRNA
GC content 0.60
exon number 2
gene id AMCG00005226
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19243699 ~ 19244617 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGGACTCGAGAGCTTTACAACTTGCTTACGTCAAACGTCTGTCAGATGGTGAAGATGCTTTTCTCCTCTGCACAGATTATTTCCTGAAGCTAGACGCCCCCATGAACAACATCACCACGTCTCAGGGCCAGACCGCCGAGCTGCACTGCAAGGTCTCGGGCAAGCCCACCCCGGCCATCCGCTGGCTGAAGAACGACGCTCCCGTGGTCCCCGAGCCCAGGCGGGTGTCCTTCCGGCTCACCGACTTCGGCTCCCGTCTGCGGATCCGCAACTTGGACACCACTGACACGGGCTACTTCCAGTGCGTCGCCACCAACGGCAAGAGCACGGTGTCAACCACCGGGGTGCTCTTCGTCAAGTTCGGTCTGAGTCCCGCCCCCAACCCGGGAAAACCTTTGCCGtaa

Function

GO:

id name namespace
GO:0006468 protein phosphorylation biological_process
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway biological_process
GO:0016021 integral component of membrane cellular_component
GO:0005524 ATP binding molecular_function
GO:0004714 transmembrane receptor protein tyrosine kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183949 lncRNA downstream 23941 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 23941 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 157658 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 490166 18741884 ~ 18753533 (-) False AMCG00005207
TU183675 lncRNA downstream 891567 18351867 ~ 18352132 (-) True G146023
TU183990 lncRNA upstream 219390 19464007 ~ 19464975 (-) True G146257
TU184066 lncRNA upstream 366149 19610766 ~ 19611005 (-) True G146315
TU184074 lncRNA upstream 459387 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 509579 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 511630 19756247 ~ 19757237 (-) True G146348
AMCG00005223 mRNA downstream 16700 19219826 ~ 19226999 (-) True AMCG00005223
AMCG00005225 mRNA downstream 27560 19207738 ~ 19216139 (-) True AMCG00005225
AMCG00005224 mRNA downstream 42287 19151990 ~ 19201412 (-) True AMCG00005224
AMCG00005218 mRNA downstream 96872 19120164 ~ 19146827 (-) True AMCG00005218
AMCG00005213 mRNA downstream 163096 19072155 ~ 19080603 (-) True AMCG00005213
AMCG00005219 mRNA upstream 72138 19316755 ~ 19330003 (-) True AMCG00005219
AMCG00005221 mRNA upstream 87624 19332241 ~ 19340709 (-) True AMCG00005221
AMCG00005220 mRNA upstream 104955 19349572 ~ 19359668 (-) True AMCG00005220
AMCG00005222 mRNA upstream 121524 19366141 ~ 19367265 (-) True AMCG00005222
AMCG00005227 mRNA upstream 221579 19466196 ~ 19475443 (-) True AMCG00005227
TU183873 other downstream 228036 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4276076 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 5906953 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7087321 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 325442 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 513615 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 776093 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 776093 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 1029774 20274391 ~ 20279746 (-) True G146532

Expression Profile