RNA id: AMCG00005229


Basic Information

Item Value
RNA id AMCG00005229
length 681
RNA type mRNA
GC content 0.55
exon number 5
gene id AMCG00005229
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19664101 ~ 19669052 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

ATGCTAGGATCTAAAACGGATTGCGAGAACGGCCAGTTTCAGTGCAAAAACCAGAGGTGCATCCCGACCATCTGGAGATGCGACGAGGACGACGACTGCTCGGACAACAGCGATGAGGAGAACTGCCaGCGCAGAAAACTGCATTTGAAGTGTGAGGAGTTGGGCTGGGAGCTGGATGGTGGTGGATCTTGGACCCTATTGTCACTGGGAGTGGAGGCCCGTCTATGCGAACACATCATAGCACATCGCAGCGCCTCTGTGATCCTGAACCGAGTGGCTCAGAGATCCGGATTTCAAAGTGTCGAGAAGCAGTCGGATAAACCTCAGTGTCTGTCAAGGAGACCTACGCAAGAGGTCCTAGATCTCGGGTCTGCCTGGAAGCTGCGATTGTGCACCAACACCTGCACTTTGAAGAGGTGCCTCTGCAGGGCTAGGGGCTCATATGAGCAGGGAGCCCAGTCGAGGGGTTGGGGACAGAGCGAAAATGAAGGGAAGAAAGACACACCTCACATGTTGCCGCACCACTTCTGCGACGGTGTTGCGATCTTTGTGATGGCGGTGCTCATCGGTTGTGGGGGCATTCATGAGCATGAGGGTCGCTACCTTGAGTCGTGTTATTGCCTGAAGCCAGAGCTGACTGTTATGCATCATGTGACTGAGTGGCGCTCCGGCCCGCTGTAG

Function

GO: NA

KEGG:

id description
ko03440 Homologous recombination

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU184066 lncRNA downstream 53096 19610766 ~ 19611005 (-) True G146315
TU183990 lncRNA downstream 199126 19464007 ~ 19464975 (-) True G146257
TU183949 lncRNA downstream 444343 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 444343 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 578060 19083995 ~ 19086041 (-) True G146189
TU184074 lncRNA upstream 34952 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 85144 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 87195 19756247 ~ 19757237 (-) True G146348
TU184135 lncRNA upstream 102720 19771772 ~ 19774991 (-) True G146358
TU184261 lncRNA upstream 381064 20050116 ~ 20052921 (-) False G146461
AMCG00005230 mRNA downstream 36465 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005228 mRNA downstream 63818 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005233 mRNA downstream 134419 19523812 ~ 19529682 (-) True AMCG00005233
AMCG00005234 mRNA downstream 171586 19488650 ~ 19492515 (-) True AMCG00005234
AMCG00005227 mRNA downstream 188658 19466196 ~ 19475443 (-) True AMCG00005227
AMCG00005241 mRNA upstream 57892 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005240 mRNA upstream 89521 19758573 ~ 19761337 (-) False AMCG00005240
AMCG00005250 mRNA upstream 115822 19784874 ~ 19799356 (-) True AMCG00005250
AMCG00005249 mRNA upstream 130682 19799734 ~ 19805056 (-) True AMCG00005249
AMCG00005251 mRNA upstream 177739 19846791 ~ 19855209 (-) True AMCG00005251
TU184064 other downstream 90783 19570059 ~ 19573318 (-) True G146313
TU183873 other downstream 648438 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4696478 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6327355 13336209 ~ 13336746 (-) True G145046
TU182157 other downstream 7507723 12154125 ~ 12156378 (-) True AMCG00005011
TU184128 other upstream 89180 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 351658 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 351658 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 605339 20274391 ~ 20279746 (-) True G146532
TU184470 other upstream 940302 20609354 ~ 20610643 (-) True G146618

Expression Profile