RNA id: AMCG00005231


Basic Information

Item Value
RNA id AMCG00005231
length 5124
RNA type mRNA
GC content 0.51
exon number 9
gene id AMCG00005231
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19552463 ~ 19564086 (+)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

tttcagattgcCGATATTGACCACGACAGATTACATCCATGTCACTGAACACCTTGAAAGATGgacaaaacaaattCCAATGGCCTGTCATCAAAGCCATCTGAGAGCGGAGGCCAGCGGAAGCAGCTCCCCTACTCGGTGGAGACTCCATATGGGTTTCATTTGGACCTGGACTTCCTGAAGTATGTTGACGACATTGAAAAGGGCAACACGATCAAGAGGGTTCACATTCAGAGGAGAGCCAAAGGCCCGAAGTTCAGCACACTGCCCCGTAACTTCAGTCTGCCAGACCATGGCTCCAAGTCCGCGCCCAAAGAGAGCTGGAGCAACACCTGCTCTCTTGGGCCCAAAACCAAATCGCGGGTGCTGGAGGTCCAACAGATCTTCGAGTTCAGGCCTGCTGACAGCGTGACACCAGGACCTCCCCGATCCCCGGGTCTTGGTTACAGAACAATGAAGGTTGTCGAGGATGCCACTCTCAAGACGTTTGATGAGCAGCCTCTGGGCTTTCGAGTGAGACCCCAGCTGCTGAGAGCCTCCAGCATGCCTGTGACCGTCCTGCAGAGAAAAAACTCGGAGCCTTCTGAAGATACGGCCCCGCCAGCTACCCCTGACTCCTTCAAAGAGAACGGCTCCTCTGAAAATGTCTTTTGTTCCTCTGACTCAGTCGGCCTGGGTAAGCAAGGTGAATTGGGCACGCAGAGGGACTCGTCCAGCCCACACCAGCAGTTTGCCTCAGTTTTGCAAAGGATCAAAGAGCTCGAGGAGCAAGTGAGAACCATTCCCGAGTTAAAAAGGCAAATATGCACTCTGAGGGAAGAGAAGGGACAGCTGGAACTTAAGCTTAACTCTCAGCCTGTGGTGGTCTCGGCAGAGGAAGCACGCCACACAGCGCTGGAGATCAAGGCGCACTATAAAGAGCACCCGGAGGCTTCCAGCAGTTCAGCCGTTGGACAATTACAAAAGACCACAGCCGGCCTCACAGCACGAGATGTCAGTGTGGGCGTTACGGAATCCGATCTGGGTTTGACACCTCAGAAGTCGAGTAGCGATACAGACCCTCTCACTATCATAACCCTGCGGACAAAACTCACCGTCCTGGAGAAAGAGCTGGGTGATGCCACGAGGGAGCTAGAGAGAGCTAATTCTGCACTGAGGGAGCAAACAGAAGAGAACGGGAGGCAGGAGGAAAGGATAAAGCGTCTGATGGAAGAGGCAGAGGCTCGTGCGGCGCTGGGAGGAACAGTGGACACGGTGGAGAGCAAGAGATCTTCTGAGGGTGTCTCTGTCCGTGATGCCGCCATGAGCACAGACACAGATCTACACTGGAAGAGCTTCAGCCACACAGGAGTTACAACCGAGGCCGACTCCCAACCGAGATGTGACCCTGCGGCGGGCCACACTGAGAAGACAATGAAAGATCTCAGGAGCTCCAGCGTTCAGACGGACTCTTTTGTAGCCGGTGATACAGAGCTTTCAATAAACGTCCCGGCGCCTGAGACATCAGTCGAGTCTACGATCGGCACCTGTGAGGAAGCCGCCGAGACCACGGAGGAAGCCTTGATGGCTCGTCAGTGTGTCAGCACAAAAGGCATGAGGGAACTCACATCTACAAGCTACGCAAACCAGGCAGCTGCCAGTCCTGTCTGCAGAGAGGAGGAAAGTTGCTTCCCAGATGACGGGAACCCCTGCCAACCGGAGGGCGTGTCTGAGGTGGACAACACAGAGCCCCATCCGCCTGGAACTAATGGGTCCACTTCCTCTCAGGCTGCAGTGGGGCAGTATGTGACCAAAATCCAGGAGCTTTTACAGGAGCAGTGGTCCTGCCTGGAAAACGGACACCCAGAGCTGGCCAGCACGCTAAAGCAGCCCGCGTCGAAGATAAGCTCCATCCAGAACCAGCTGTTCAGCTCTCTCAACGCCCTGTCGTCCATGTACTCGTCCCAGGAGAAGAAGGAGTCCGTCTGTGGCAGCAAACAGCAAGCAGGCTGCTCCTCCCCCTCAGCTCTGAAGTCCATCATGAAGAAGAAGGATTGCAGTGTCGAGCTCAGGAGCGCCGGAGCCAAGAAGAACCTGAAGTTTGTGGGCGTGAACGGCGGCTATGAAACGACATCAAGTGAGGAGTCCAGCAGCGAGGATAATGTGGAGGATGATAGCTCAGAGGccgaggagagagaggagggggacgAGGCAGTTAAAAGCTCGGAGGAGTCCAGCGGGATGGGACATCGCTCACTAGAGGCCTCAGAACCCGGGACCCTGCCCCAGGCAGAGAGTTCAAAGAGTGAAACGGTGGATGAGGATTTTATCTCCGCTTGTCATTTCCTTCAAGATCACCTGGCAGAGGTCGCTTCACCCGACAAGGAACTGAGGCAGGTTCTGGGTGTCGTCTGTCAGGAGTGGTTCCGCGTGTCCAGCCAGAAGGCATCCCAGGCCCACCTGGTCTCCCTGTACCTGAGGCAGCTGGAGGCGCTGACCCTGGAGCTGAGGGAGTTCGTCGTGAACCTGGCCGATGGGAACGGGAACACCGCCCTGCATTACAGCGTCTCTCACTCCAACTTCCGCATCGTCAAGCTGCTGCTCGGCACAGGTTTGTGCAAAGTGAATCACCAGAACAAGGCGGGATACACCGCCATCATGTTGGCTTCACTGACGGCCGCGGACTCCCAGGAGGACATGGACGTGGCCCTGCAGCTCCTGAAGCAGGGAGACATCAACACGAGAGCCAGCCAGGCGGGCCAGACGGCTCTGATGCTGGCGGTGAGTCACGGCCGGGTGGACATGGTGCGGCTGCTGCTCATGTGCGACGCTGACGTCAACATCCAGGACCAGGACGGGTCCACAGCACTCATGTGTGCCTGCGAGCACGGCCACACGGAGATCGCACGCCTGCTGCTCGGCCAGCCCACGTGCGACACGGGCATCAGCGACAACGAAGGCAATACCGCTTTGTCCGTGGCCCTGCAGTCTTCCCACACAGAGATAGCTGACCTTCTGATGGCCCACGCGGACCGTGGGGCCCCTGACGCGCCGTAGCCATTTGAACCAAAGCCCTCTTATTCCCAGGCATGTGACTACAAAGGCCCCATTTAGAAGGGGGCTCCCGGCATGTCTGATGATGACTTCAGCCATTCTCTGTGCAGCGCTCACCATTAAAAATCACAtagttcaaatatttataggcATTCCTCCTCCGTAATTAGCATATCGCTGGTGCCCCTGCCATAAAAGGATCCTCCTCACGTGCCAATTAAATCCGAACGTGGGGTTCAGAAAGCACCGGTTTCACTCCAGTGGTCGGATCTCTGTCCCATTATTAAATCAACACTGCAATCCTCCTCTACAAGTCCGTGATAAGATACCAATCAGATATTTTAAGTCTCATGtgtgtaatacatacatatatatgtatgcccTTGATAAGGATGtctgacaatacattaataatactatatattctttattttgctATTTTCTAAATTTCATAATTTAGCGATCCTATGTGGTTTTTCATTCATAAGgtctttcttatttattttgttcataaagcCTGCGTAGAGGAATGAAATATAGGGTTAGATCCTCCAGACTTTCCTCCAGACTGTTGTCCTTTCTCCATATGTCTTGTTGATGCCAAACTAGTTCAGACCTCAAACTCTTTGTGATTAACGCAATAGTGTTAAAACTCATTTGTGTTTATGAAGCTCTGTCCGGGATGGATAAAAATAGAACTAACTTGGGCAACTCTGTCCTTAGAGTCCCCAGCTTCCGtctaaataatatattgtgtacGTTGTGTATTGTTCATCTCCTGTATTGAGTCTTCTCTGCCGTTAATATGCAAAATGTTTGTTAGAgatgcacaaaacaaatctgagatGCCTCCTCAGATTCCTATTAAGATGTTCTTCTCTTCCTTTGATTCGAACGGCATCTGTACGTCACAGGGCCGTGCTTTCGTTTGCAACACTTTTTCCTCCAGTCTCCGCTGTAATTACCGATTCACTTTAAAGTAAGTTGGGTGATTGCAACGGAAGATAATCACGTGTCGGCGGGAGAGATTTGTAATGTTGAAGGGCCGTGGTACAGAATGCTGTGGCTGCCCAATCGTAGAAGGCATGAGTTGGCCTCCACCGCTCCCATCCATGGTGGCGCGCCACCGAGTTGATGAAGAGTGCTGGAGTTGGGAACGGAAACCGGACAAGGCAAGAAGTGGAATAACAGTATTAATTCGGCACTTGCTGAATCAAAGACTTGTGGGTATCTGCTCTACAGGATACCCACTCATGTGCTTGAAGAAGCTTTTAGGAGTCCCTCTGGACTAGGGAAGACTAAGTGAACAAGACTGGCCAGAAAATCTCCTCGTTTGTGATAACAATATTGAAGgtcataataaaattaatatattcaaaagtATATCCGTTATCCTAACCCACAGTCTGGGATCTCATTGGAAGACGCCATATTTCTAGTTATTCTGCAACATTTCAGCACAATATATGGAACAATAACCCTTTGCCCAGCAGGCTTGTGGGTGCAGTATTACCCAGGTAGCAGACCGAATGTCTACATGTCGAACGATGTCGTGGTTTCGTTGTTAGCTGTTCAACGTCCTGTTCTTTCCCATATTTAAACTCAGCACTCGACAGCATGTCCAATACAACAACTTGATGTCAACCCTGTATTGTTCGAGACTACTGTTTTCAAAGGTGATCTTCTGGCCGGAGGAAAAGGCCACTGCCTTAATCGAGTGTCCTCTGCCAGGGACAGTGGCTGATCAGTTGGATGTCTAGTGGTCCCCTTTGAGAATGAAGTAGGGAATGCGGTCTGCAATGTTATGCACGCGAAGTGTTGATAggctttgtgttttaatgtttgaaaatgtattattctgtcTCCAAAGCAAGttcatctgtgtgtttgttatgtATGGCAAAAACGGAGAAGTATATCTCTCTCCACAATCAcagatattgtatatttatgacCTAATTTTTTGTATGTACAAAGAATTGCTTGTGGGTGTGTTGAAAACAACTACAGAAAAAGCAATGTATGCACTTGGTGGTTCGTTggaggttgtttttgtttttttgtattatttaatgaaacttaaaatgaaaa

Function

GO: NA

KEGG:

id description
K22808 KANK; KN motif and ankyrin repeat domain-containing protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183999 lncRNA upstream 71865 19475139 ~ 19480598 (+) False AMCG00005232
TU183989 lncRNA upstream 87488 19463996 ~ 19464975 (+) True G146256
TU183944 lncRNA upstream 333118 19218431 ~ 19219345 (+) True G146222
TU183921 lncRNA upstream 357259 19117531 ~ 19195204 (+) True G146202
TU183905 lncRNA upstream 468146 19084019 ~ 19084317 (+) True G146188
TU184054 lncRNA downstream 5387 19569473 ~ 19570003 (+) True G146303
TU184055 lncRNA downstream 9237 19573323 ~ 19575574 (+) True G146304
TU184057 lncRNA downstream 21362 19585448 ~ 19585656 (+) True G146306
TU184058 lncRNA downstream 28664 19592750 ~ 19593094 (+) True G146307
TU184126 lncRNA downstream 196066 19760152 ~ 19760791 (+) True G146350
AMCG00005232 mRNA upstream 22010 19475285 ~ 19530453 (+) True AMCG00005232
AMCG00005217 mRNA upstream 436769 19092227 ~ 19115694 (+) True AMCG00005217
AMCG00005197 mRNA upstream 725971 18824891 ~ 18826492 (+) True AMCG00005197
AMCG00005199 mRNA upstream 731040 18815029 ~ 18821423 (+) True AMCG00005199
AMCG00005198 mRNA upstream 745973 18793732 ~ 18806490 (+) True AMCG00005198
AMCG00005239 mRNA downstream 137377 19701463 ~ 19704317 (+) True AMCG00005239
AMCG00005237 mRNA downstream 145250 19709336 ~ 19711528 (+) True AMCG00005237
AMCG00005238 mRNA downstream 178267 19742353 ~ 19755790 (+) True AMCG00005238
AMCG00005235 mRNA downstream 198082 19762168 ~ 19771973 (+) True AMCG00005235
AMCG00005236 mRNA downstream 211393 19775479 ~ 19783604 (+) True AMCG00005236
TU183561 other upstream 1780938 17765257 ~ 17771525 (+) True G145932
TU183002 other upstream 4167851 15384243 ~ 15384612 (+) False AMCG00005105
TU182286 other upstream 6771293 12780580 ~ 12781170 (+) True G144940
TU181952 other upstream 7889095 11662681 ~ 11663368 (+) True G144677
TU180912 other upstream 11821463 7729389 ~ 7731000 (+) False AMCG00004870
TU184056 other downstream 15487 19579573 ~ 19579807 (+) True G146305
TU184341 other downstream 618268 20182354 ~ 20184643 (+) True G146519
TU184347 other downstream 709427 20273513 ~ 20279786 (+) False AMCG00005272
TU184405 other downstream 957563 20521649 ~ 20524819 (+) True G146575
TU184436 other downstream 1097840 20661926 ~ 20670169 (+) True G146596

Expression Profile