RNA id: AMCG00005233


Basic Information

Item Value
RNA id AMCG00005233
length 2333
RNA type mRNA
GC content 0.62
exon number 8
gene id AMCG00005233
representative True

Chromosome Information

Item Value
chromosome id CM030140.1
NCBI id CM030140.1
chromosome length 22460246
location 19523812 ~ 19529682 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

TGAGAGTGACTTCCCACCGGGACGCCCGTGAGATGCCTGGCCTCGTGCAGAGCGACGGCCCCGGCAGCTGCAGTCCGCTGAAGAAGAGCCGGCTGTCCCTCAAGTTCTTCCAGAAGAAGGAAACCAAAAGGGCTCTGGATTTCTCCGAGGCGCTGGAGGAAGAAGGCAACCCGCCCGAGCTAGCCGGCCCTGACAGCTGCGATCAGATCATCCCGGCCGCCCAGCCTCAGTCCCCGCTCCCCTGCGAGAGGAGAGAGTCTTTGGTGCCTTTTGTCGGTCTGAATAACTTGGGCAACACCTGCTACCTGAACAGCATCCTGCAGGTGCTGTACTACTGCCCGGGTTTTAAAGATGGGATTAAGGAGTTATACAATGTGATgtcaaagaagaaagaaaagcaaaaggaTGATGCTGTGAAAAATGAGGAGAAGCCGGAGCAGCACAGTGACGAGGGGTTACCGGTGAACATTGAGCTGCTCGGTAGTTTCCACGGCCTGATCGTGACGCTGGAGCAGCTGCAGTCCAGCTACCTGCTCAATCCCGACAAGTACAGCGATGGGGAACTCGCCACGCCGCCTCGCAGGCTGCTCAACACGCTGCGGCAGCTGAACCCCATGTATGAGGGGTATCTACAGCATGATGCTCAAGAGGTGCTGCAGTGCATCCTGGGCTACATCCAGGAGGCTTGCGAGACCATAAAGAAGGAGAACGCCAGTCCCGAGGAGCCGGTCGACCGTCCAGACGAGGCGCAGGTGAAGGAAGAGGAGAACACGGGGATGAACGCCAGCGACCGAGCCAGGGAAGAGGAGGTGAAGGACGAGAAGACATCAGAGCAGGACGTGACCCAGGATGCGCAGGTCCACGGGAAGAGGAAGAGCGACACAGAGGCAGGCAACGCCAAGAAGAAGTCCAAGCCCCTGAAAGCGCAGAAGGCCCCGGATGGCAATAAACACTTCACCCGGTCGAAGAGGAAGTCTTCCAGCGACACGGGCATCGAGAGCGCCAAGGAGGAGGGACGGGAGGAGGCCCCCAACGCCGACGAGAAGACCGACGGCGGCTCCAAAGCGcagacgaagaagaagaagcggCCGAAACTGAGCTGGTTGAAGCCGTCGGGCAAGCAGCCCAGCATCTTCTCCAAGTTCCGCAGCATGGGGCGGATCAGCTCCCACGCAGGGGGCCGAGGGGAggcgagggaggaggagggcgtCTCGGTGAAGCAGGAGGCCGAGGAGGGGCGTGCGGCCGAGCCTGCGGGGAAGGCCGAGGAGGAGACGGAGAAGAGCGGGAGCCAAGAGCGCAGCTGTCTGGACCTGATGGAGAGGCTGTTCCAGGGCCGGCTGGTGCTGCGGACGCGGTGCCTGGAGTGCGAGTGCTACACCGAGAGGCGGGAGGACTTCCAGGACATCAGCGTGCCGGTGCAGGAGGACGAGCCCTGCAAGGCTGAGCCCGAGTCGGAAGTTTCTCCGGATCCTAAAATGGAACTGAAGACCCTGAAGTGGGCGATCTCTCAGTTCGCCTCGGTGGAGAGGATTTTCGGGGAAGATAAATACTTCTGCGAAACCTGCCATCACTACACCGAAGCCGAACGCAGCCTGTTATTCGACAAGACGCCCGAGGTGGTGACGATACACCTGAAGTGCTTCGCTGCGAACAGTACTGAGCTGTCGTTGGAGGAGTGGTGCTCCCGGCCCTCGAAGGAGCACTATGAGCTGTTCGCCGTCGTGATGCACAGCGGTGTCACCATCACCAGTGGACACTACACCACCTACATCCGCATGATGGACCTCTGCAACGTGGAGCTGCGGCAGCAGAGGCATGCGGAGGATGGCGTCCAGCCCGAGCCGCTGAACGAGGAGGAGGCCAGGGCCTGCGACCCCCAGGACTACGACGATGGCGAGGTTTCGTTCAACGTGAGCGGCAAGGTGCCCGGCGCCGCGGTGGGCAAAGCCACCGGCAAGAAGTCCTCGGACGGGGTGGGACTGCTGGGGGGCCAGCGCAGCAAGGCCAGTTTCGACCTGGGGGGCGGCAAGACGGCGAATCCCGAGAAGCCCGTCGGCTGCGCCACGGAGAACGGGAAGACGGAACGAGGACCTGGACACGAGGACACCCCGAAGGGCGAGAGGCAGCGCCCTGAGGCCCCCAGCGCCGACCGCGGCACGGACGGCCCCCCCGACCCTGCGCTGCGGGACCTGCTGGACTACGAGGGCAAGTGGATGCTCTTCGATGACTCGGAGGTGAAGCTGGTGGAAGAGAAGGAATTCCTGAGCTCCTGCTCGCCAGAGACCTGCAGCACGTCCACGCCCTACCTGCTCTTCTACAAGAAGGTCATC

Function

GO:

id name namespace
GO:0008233 peptidase activity molecular_function

KEGG:

id description
K11832 USP1; ubiquitin carboxyl-terminal hydrolase 1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU183990 lncRNA downstream 58837 19464007 ~ 19464975 (-) True G146257
TU183949 lncRNA downstream 304054 19218391 ~ 19219758 (-) True G146227
TU183950 lncRNA downstream 304054 19218424 ~ 19219758 (-) False G146227
TU183906 lncRNA downstream 437771 19083995 ~ 19086041 (-) True G146189
TU183766 lncRNA downstream 770279 18741884 ~ 18753533 (-) False AMCG00005207
TU184066 lncRNA upstream 81084 19610766 ~ 19611005 (-) True G146315
TU184074 lncRNA upstream 174322 19704004 ~ 19732117 (-) True G146322
TU184123 lncRNA upstream 224514 19754196 ~ 19754744 (-) True G146347
TU184124 lncRNA upstream 226565 19756247 ~ 19757237 (-) True G146348
TU184135 lncRNA upstream 242090 19771772 ~ 19774991 (-) True G146358
AMCG00005234 mRNA downstream 31297 19488650 ~ 19492515 (-) True AMCG00005234
AMCG00005227 mRNA downstream 48369 19466196 ~ 19475443 (-) True AMCG00005227
AMCG00005222 mRNA downstream 156547 19366141 ~ 19367265 (-) True AMCG00005222
AMCG00005220 mRNA downstream 164144 19349572 ~ 19359668 (-) True AMCG00005220
AMCG00005221 mRNA downstream 183103 19332241 ~ 19340709 (-) True AMCG00005221
AMCG00005228 mRNA upstream 45554 19575236 ~ 19600283 (-) True AMCG00005228
AMCG00005230 mRNA upstream 93573 19623255 ~ 19627636 (-) True AMCG00005230
AMCG00005229 mRNA upstream 134419 19664101 ~ 19669052 (-) True AMCG00005229
AMCG00005241 mRNA upstream 197262 19726944 ~ 19741365 (-) True AMCG00005241
AMCG00005240 mRNA upstream 228891 19758573 ~ 19761337 (-) False AMCG00005240
TU183873 other downstream 508149 19014547 ~ 19015663 (-) False AMCG00005214
TU182803 other downstream 4556189 14964579 ~ 14967623 (-) False AMCG00005077
TU182413 other downstream 6187066 13336209 ~ 13336746 (-) True G145046
TU182156 other downstream 7367434 12154125 ~ 12156378 (-) False AMCG00005011
TU184064 other upstream 40377 19570059 ~ 19573318 (-) True G146313
TU184128 other upstream 228550 19758232 ~ 19761446 (-) True AMCG00005240
TU184245 other upstream 491028 20020710 ~ 20023507 (-) False AMCG00005256
TU184246 other upstream 491028 20020710 ~ 20023507 (-) False AMCG00005256
TU184357 other upstream 744709 20274391 ~ 20279746 (-) True G146532

Expression Profile